Locus 2411

Sequence ID 3R_DroMel_CAF1
Location 6,757,429 – 6,757,549
Length 120
Max. P 0.939859
window3920

overview

Window 0

Location 6,757,429 – 6,757,549
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.00
Mean single sequence MFE -39.32
Consensus MFE -37.98
Energy contribution -37.18
Covariance contribution -0.80
Combinations/Pair 1.17
Mean z-score -1.37
Structure conservation index 0.97
SVM decision value 1.30
SVM RNA-class probability 0.939859
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6757429 120 + 27905053
UUCGAGCGGGGGCCAAAACGGCUCUCGAGUUUUUUGGCAGCCAAAACCUUGUGGCUGUUUUGGACGGGCCAAUUACGAUAAUUGUCGCGUUCAUUUUUCAUUUGACAACGUGCGACAGUU
.(((..((((((((.....)))))))).((((...((((((((........))))))))..))))..........))).((((((((((.(((.........))).....)))))))))) ( -40.20)
>DroSec_CAF1 21592 120 + 1
UUCGAGCGGGGGCCAAAACGGCUGUUGAGUUUUUUGGCAGCCGAAACCUUGUGGCUGCUUUGGACGGGCCAAUUACGAUAAUUGUCGCGUUCAUUUUUCAUUUGACAACGUGCGACAGUU
.(((.(((..((((.....))))((..(((.....((((((((........)))))))).((((((.(.((((((...)))))).).))))))......)))..))..))).)))..... ( -38.90)
>DroSim_CAF1 25958 120 + 1
UUUGAGCGGGGGCCAAAACGGCUCUUGAGUUUUUUGGCAGCCGAAACCUUGUGGCUGCUUUGGACGGGCCAAUUACGAUAAUUGUCGCGUUCAUUUUUCAUUUGACAACGUGCGACAGUU
.(((.(((((((((.....)))))))..((((...((((((((........))))))))..))))..))))).......((((((((((.(((.........))).....)))))))))) ( -39.00)
>DroEre_CAF1 6042 119 + 1
UUCGAGUGG-GGCCAAAACGGUUCUCGGGUUUUUUGGCAGCCGAAACCUUGUGGCUGCUUUGGACGGGCCAAUUACGAUAAUUGUCGCGUUCAUUUUUCAUUUGACAACGUGCGACAGUU
.((((((..-((((....((.....)).((((...((((((((........))))))))..)))).)))).))).))).((((((((((.(((.........))).....)))))))))) ( -37.60)
>DroYak_CAF1 18006 120 + 1
UUCGAGUGGGGGCCAAACCGGUUCUCGGGUUUUUUGGCAGCCGAAACCUUGUGGCUGCUUUGGACGGGCCAAUUACGAUAAUUGUCGCGUUCAUUUUUCAUUUGACAACGUGCGACAGUU
.((((((...((((...(((.....)))((((...((((((((........))))))))..)))).)))).))).))).((((((((((.(((.........))).....)))))))))) ( -40.90)
>consensus
UUCGAGCGGGGGCCAAAACGGCUCUCGAGUUUUUUGGCAGCCGAAACCUUGUGGCUGCUUUGGACGGGCCAAUUACGAUAAUUGUCGCGUUCAUUUUUCAUUUGACAACGUGCGACAGUU
.(((..((((((((.....)))))))).((((...((((((((........))))))))..))))..........))).((((((((((.(((.........))).....)))))))))) (-37.98 = -37.18 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:08 2006