Locus 241

Sequence ID 3R_DroMel_CAF1
Location 947,044 – 947,150
Length 106
Max. P 0.500000
window429

overview

Window 9

Location 947,044 – 947,150
Length 106
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.81
Mean single sequence MFE -29.17
Consensus MFE -12.50
Energy contribution -12.67
Covariance contribution 0.17
Combinations/Pair 1.18
Mean z-score -2.11
Structure conservation index 0.43
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 947044 106 - 27905053
C-CAGGGGUCGCACCAGCGUUCCAGCC----AGCCAAGUUCAAAUUUA-AA-------GCACUCGAUGGCAGGCAACGUUAUACGG-CACAUAAUUUGAACUUAAAAGCAGCCUAACAAC
.-.(((((.(((....)))..)).((.----....(((((((((((..-..-------((.....(((((.(....))))))...)-)....)))))))))))....))..)))...... ( -26.70)
>DroSec_CAF1 36101 110 - 1
C-CAGGGGUCGCACCAGCGUUCCAGCCAGCCAGCCAAGUUCAAAUUUA-AA-------GCACUCGAUGGCAGGCAACGUUAUACGG-CACAUAAUUUGAACUUAAAAGCUGCCUAACAAC
.-..((((.(((....)))))))((.((((.....(((((((((((..-..-------((.....(((((.(....))))))...)-)....)))))))))))....)))).))...... ( -30.50)
>DroSim_CAF1 42114 110 - 1
C-CAGGGGUCGCACCAGCGUUCCAGCCAGCCAGCCAAGUUCAAAUUUA-AA-------GCACUCGAUGGCAGGCAACGUUAUACGG-CACAUAAUUUGAACUUAAAAGCUGCCUAACAAC
.-..((((.(((....)))))))((.((((.....(((((((((((..-..-------((.....(((((.(....))))))...)-)....)))))))))))....)))).))...... ( -30.50)
>DroEre_CAF1 36887 102 - 1
CCCAGGGGUCGCACCUGCGUUCCAGCC----AGCCAAGUUCAAAUUCA-AA-------CCACAUCAUGG----CCACGUUAUGCGG-CACAUAAUUUGAACUU-AAAGCUGCCUAACAAC
....((((.(((....)))))))((.(----(((.(((((((((((..-..-------((.(((.(((.----...))).))).))-.....)))))))))))-...)))).))...... ( -29.90)
>DroAna_CAF1 33717 95 - 1
C-AAGGGGUCGGGCCAGCGG------C----AGCCAAGUUCAAAUUUUUAA-------CCGCACU------GCGAACGGUAUACGG-CACAUAAUUUGAACUUAAAAGCUGCCCAACAAC
.-..(..((.((((.(((((------.----..))(((((((((((.....-------(((.(((------(....))))...)))-.....)))))))))))....))))))).))..) ( -29.50)
>DroPer_CAF1 123555 111 - 1
C-CAGAGCCAGAGUCAGAGUCAGAGGC----AUCCAAGUUCAAAUUUUUAACCGCACCGCACUCUAUGG----CAACGGUAUACGGGAACAUAAUUUGAACUUAAAAGCUGUUCGGCAAC
.-....(((.(((.(((.((.....))----....(((((((((((.....(((.((((..(.....).----...))))...)))......))))))))))).....)))))))))... ( -27.90)
>consensus
C_CAGGGGUCGCACCAGCGUUCCAGCC____AGCCAAGUUCAAAUUUA_AA_______GCACUCGAUGG__GGCAACGUUAUACGG_CACAUAAUUUGAACUUAAAAGCUGCCUAACAAC
.....((((.((....((..............)).(((((((((((...............(.....)........((.....)).......)))))))))))....)).))))...... (-12.50 = -12.67 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:31 2006