Locus 2407

Sequence ID 3R_DroMel_CAF1
Location 6,755,944 – 6,756,058
Length 114
Max. P 0.654135
window3908

overview

Window 8

Location 6,755,944 – 6,756,058
Length 114
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.31
Mean single sequence MFE -28.06
Consensus MFE -27.20
Energy contribution -27.04
Covariance contribution -0.16
Combinations/Pair 1.03
Mean z-score -1.11
Structure conservation index 0.97
SVM decision value 0.25
SVM RNA-class probability 0.654135
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6755944 114 + 27905053
UUAGCUUUGGAUUCUUGGAUUCCCGGGCUUAACUUCGGCUUCUGCAACGACCGCAGCA------CAAAAAUAUUUUCAAUUAUGAUGCCGGAGUGAGGAACUCUAGAAUUUUUCAAUUAA
..((((..(((.((...)).)))..))))..((((((((..((((.......))))..------...........(((....))).))))))))((((((........))))))...... ( -26.70)
>DroSec_CAF1 20105 114 + 1
UUAGCUUUGGAUUCUUGGAUUCCCGGGCUUAACUUCGGCUUCUGCAACGACCGCAGCA------CAAAAAUAUUUUCAAUUAUGAUGCCGGAGUGAGGAACUCUAGAAUUUUUCAAUUAA
..((((..(((.((...)).)))..))))..((((((((..((((.......))))..------...........(((....))).))))))))((((((........))))))...... ( -26.70)
>DroSim_CAF1 24485 114 + 1
UUAGCUUUGGAUUCUUGGAUUCCCGGGCUUAACUUCGGCUUCUGCAACGACCGCAGCA------CAAAAAUAUUUUCAAUUAUGAUGCCGGAGUGAGGAACUCUAGAAUUUUUCAAUUAA
..((((..(((.((...)).)))..))))..((((((((..((((.......))))..------...........(((....))).))))))))((((((........))))))...... ( -26.70)
>DroEre_CAF1 4519 114 + 1
UUAGCUCUGGAUUCUUGGAUUCCCGGGCUGAACUUCGGCUUCUGCAACGACCGCAGCA------CAAAAAUAUUUUCAAUUAUGAUGCCGGAGUGAGGAACUCUAGAAUUUUUCAAUUAA
(((((((.(((.((...)).))).)))))))((((((((..((((.......))))..------...........(((....))).))))))))((((((........))))))...... ( -30.90)
>DroYak_CAF1 16487 120 + 1
UUAGCUUUGGAUUCUUGGAUUCCCGGGCUCAACUUCGGCAACUGCAACGACCGCAGCACAAGCACAAAAAUAUUUUCAAUUAUGAUGCCGGAGUGAGGAACUCUAGAAUUUUUCAAUUAA
.....((((((..(((((....)))))((((.((((((((.((((.......))))...................(((....)))))))))))))))....))))))............. ( -29.30)
>consensus
UUAGCUUUGGAUUCUUGGAUUCCCGGGCUUAACUUCGGCUUCUGCAACGACCGCAGCA______CAAAAAUAUUUUCAAUUAUGAUGCCGGAGUGAGGAACUCUAGAAUUUUUCAAUUAA
..(((((.(((.((...)).))).)))))..((((((((..((((.......))))...................(((....))).))))))))((((((........))))))...... (-27.20 = -27.04 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:57 2006