Locus 2404

Sequence ID 3R_DroMel_CAF1
Location 6,753,608 – 6,753,718
Length 110
Max. P 0.607703
window3901

overview

Window 1

Location 6,753,608 – 6,753,718
Length 110
Sequences 3
Columns 117
Reading direction reverse
Mean pairwise identity 93.60
Mean single sequence MFE -25.31
Consensus MFE -23.73
Energy contribution -23.73
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.59
Structure conservation index 0.94
SVM decision value 0.15
SVM RNA-class probability 0.607703
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6753608 110 - 27905053
UAAAUAUUUAAGAGCCGGCAGAGAA-----AAUGUA--AAAAAAUGAAACGGAAAACACGGAAGACGAAGCCGGCGACGAAAAAGGUGCAAAGUGUCGCCCUCAGCGCUUGGCAAUC
.............((((((......-----......--............(.....).(....).....))))))...........(((.((((((........)))))).)))... ( -23.90)
>DroSim_CAF1 22171 110 - 1
UAAAUAUUUAAGAGCCGGCAGAGAA-----AAUGUA--AAAAAAUGAAACGGAAAACACGGAAGACGAAGCCGGCGACGAAAAAGGUGCAAAGUGUCGCCCUCAGCGCUUGGCAAUC
.............((((((......-----......--............(.....).(....).....))))))...........(((.((((((........)))))).)))... ( -23.90)
>DroYak_CAF1 14049 115 - 1
UAAAUAUUUAAGAGCCGGCUGAG--AUGAAAAUGAAAAAAAAAAUGAAACGGAAAACACGGAAGACGAAGCCGGCGACGAAAAAGGUGCAAAGUGUCGCCCUCAGCGCUUGGCAAUC
.............((((((((((--.........................((......(....)......))(((((((..............)))))))))))))...)))).... ( -28.14)
>consensus
UAAAUAUUUAAGAGCCGGCAGAGAA_____AAUGUA__AAAAAAUGAAACGGAAAACACGGAAGACGAAGCCGGCGACGAAAAAGGUGCAAAGUGUCGCCCUCAGCGCUUGGCAAUC
.............((((((...............................(.....).(....).....))))))...........(((.((((((........)))))).)))... (-23.73 = -23.73 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:51 2006