| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 946,202 – 946,301 |
| Length | 99 |
| Max. P | 0.631925 |
| Location | 946,202 – 946,301 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 83.01 |
| Mean single sequence MFE | -30.10 |
| Consensus MFE | -19.54 |
| Energy contribution | -20.16 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.631925 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 946202 99 + 27905053 AGAAUCAGAAUCUGAAUCAGUAUCUGCAGCUGAAGCUGAAGCUGAAGCUGAAGCUAUACGCUGCAGUUGAAUGCUGAAUGUAGAAUG--------------CUGCUGCGAUGC ...(((....((((..((((((((((((((((.((((..(((....)))..)))).)).)))))))....)))))))...))))..(--------------(....))))).. ( -34.80) >DroSec_CAF1 35242 93 + 1 AGAAUCAGAAUCAGAAUGAGUAUCUGCAGCUGAAGCUG------AGGCCGAAGCUAUGCGCUGCAGUUGAAUGCUGAAUGUUGAAUG--------------CUGCUGCGAUGC ....((((..((((.((...((.(((((((...((((.------.......))))....))))))).)).)).))))...)))).((--------------(....))).... ( -24.80) >DroSim_CAF1 41255 93 + 1 AGAAUCAGAAUCAGAAUCAGUAUCUGCAGCUGAAGCUG------AGGCCGAAGCUAUGCGCUGCAGUUGAAUGCUGAAUGUUGAAUG--------------CUGCUGCGAUGC ...(((....((((..((((((((((((((...((((.------.......))))....)))))))....)))))))...))))..(--------------(....))))).. ( -28.30) >DroEre_CAF1 35852 107 + 1 AGAAUCGGAAUCAGAAUCAGUAUCUGAAGCUGAAGCUG------ACGCUGAAGCUGUGCACUGCAGUUGAAUGCCGAGUGUUGAAUGCUGAAUGGAAAAUGCUGGUGCGCUGC ....((((..((((..(((((.......)))))..)))------)..)))).((.((((((((((......)))..((((((.....((....))..))))))))))))).)) ( -32.50) >consensus AGAAUCAGAAUCAGAAUCAGUAUCUGCAGCUGAAGCUG______AGGCCGAAGCUAUGCGCUGCAGUUGAAUGCUGAAUGUUGAAUG______________CUGCUGCGAUGC ..........((((..((((((((((((((...((((..............))))....)))))))....)))))))...))))............................. (-19.54 = -20.16 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:30 2006