Locus 24

Sequence ID 3R_DroMel_CAF1
Location 217,342 – 217,433
Length 91
Max. P 0.983127
window41

overview

Window 1

Location 217,342 – 217,433
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 89.67
Mean single sequence MFE -29.38
Consensus MFE -24.24
Energy contribution -24.56
Covariance contribution 0.32
Combinations/Pair 1.11
Mean z-score -2.21
Structure conservation index 0.83
SVM decision value 1.93
SVM RNA-class probability 0.983127
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 217342 91 - 27905053
UAAAUCACGUGGUGUCAUUAGUAUCUUCUUCGGUGCCUUGACUCUGAGUACUGUUAGUUGCAUCGACUGUGGUUGUGAUGUAGCUGACAUC
......((..((.((((...(((((......)))))..)))).))..))..(((((((((((((.((.......))))))))))))))).. ( -28.30)
>DroSec_CAF1 9538 91 - 1
UAAAUCACGUGGUGUCAUCAGCAUCUUCUUCGGUGCCUUGACUGUGAGUAUUGUUGGUUGCAUCGACUGUGGGUGUGAUGUAGCUGACAUC
....(((((....((((...(((((......)))))..)))))))))....(((..(((((((((((.....)).)))))))))..))).. ( -31.00)
>DroSim_CAF1 10543 91 - 1
UAAAUCACGUGGUGUCAUCAGCAUCUUCUCCGGUGCCUUGACUCUGAGUAUUGUUGGUUGCAUCGACUGUGGGUGUGAUGUAGCUGACAUC
......((..((.((((...(((((......)))))..)))).))..))..(((..(((((((((((.....)).)))))))))..))).. ( -30.20)
>DroEre_CAF1 13071 91 - 1
UAAAUCACGUGGUAUCAUCAGCCUCGUCUUCAUCGCCUUGAUACUGAAUAAUGUUAGUUGCAUCGACUGUGGGUGUGAUGUAGCUGACAUC
..........(((((((...((............))..))))))).....(((((((((((((((((.....)).))))))))))))))). ( -26.10)
>DroYak_CAF1 30024 91 - 1
UAAAUCACGUGGUAUCAUCAGCCUCGCCUUCGGCGCCUUGAUACUGAGUAAGGUUAGUUGCAUCGACUGUCGGUGUGAUGUAGCUGACAUC
......((..(((((((...(((........)))....)))))))..))...(((((((((((((((.....)).)))))))))))))... ( -31.30)
>consensus
UAAAUCACGUGGUGUCAUCAGCAUCUUCUUCGGUGCCUUGACUCUGAGUAAUGUUAGUUGCAUCGACUGUGGGUGUGAUGUAGCUGACAUC
......((.(((.((((...(((((......)))))..)))).))).))...((((((((((((.((.......))))))))))))))... (-24.24 = -24.56 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:32 2006