Locus 2398

Sequence ID 3R_DroMel_CAF1
Location 6,749,210 – 6,749,325
Length 115
Max. P 0.650864
window3885

overview

Window 5

Location 6,749,210 – 6,749,325
Length 115
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 95.74
Mean single sequence MFE -37.13
Consensus MFE -35.90
Energy contribution -36.15
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.48
Structure conservation index 0.97
SVM decision value 0.24
SVM RNA-class probability 0.650864
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6749210 115 - 27905053
GCUCCUGCAAUGACCCUAAUAACUGUCUACGGGCAUGUUAAGUGUCAGCGCCGACAUGUCCUGUCAUGUCUGCACUGGGCCUCUGACCCUCCGCAGGUCCUUUGAGUGC-----UUAUAU
......((..((((.((..((((((((....)))).)))))).))))..)).((((((......)))))).(((((((((((.((......)).))))))....)))))-----...... ( -38.00)
>DroSec_CAF1 13417 115 - 1
GCUCCUGCAAUGACCCUAAUAACUGUCUACGGGCAUGUUAAGUGUCAGCGCCGACAUGUCCUGUCAUGUCUGCACUGGGCCUCUGACCCUCCGCAGGUCCUUUGAGUGC-----UUAUGU
......((..((((.((..((((((((....)))).)))))).))))..)).((((((......)))))).(((((((((((.((......)).))))))....)))))-----...... ( -38.00)
>DroSim_CAF1 17746 115 - 1
GCUCCUGCAAUGACCCUAAUAACUGUCUACGGGCAUGUUAAGUGUCAGCGCCGACAUGUCCUGUCAUGUCUGCACUGGGCCUCUGACCCUCCGCAGGUCCUUUGAGUAC-----UUAUGU
((((..((..((((.((..((((((((....)))).)))))).))))))((.((((((......)))))).))...((((((.((......)).))))))...))))..-----...... ( -37.50)
>DroYak_CAF1 9564 120 - 1
GCUCCUGCAAUGACCCUAAUAACUGUCUACGGGCAUGUUAAGUGUCAGCGCCGACAUGUCCUGUCAUGUCUGCACUGGGCCUCUGACCCUCCGCAUGUCCUGUGAGUGUGUCCUUUAUGU
((((..(((..(((..........)))...((((((((..((.(((((.(((((((((......)))))).......)))..))))).))..)))))))))))))))............. ( -35.01)
>consensus
GCUCCUGCAAUGACCCUAAUAACUGUCUACGGGCAUGUUAAGUGUCAGCGCCGACAUGUCCUGUCAUGUCUGCACUGGGCCUCUGACCCUCCGCAGGUCCUUUGAGUGC_____UUAUGU
((((..((..((((.((..((((((((....)))).)))))).))))))((.((((((......)))))).))...((((((.((......)).))))))...))))............. (-35.90 = -36.15 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:36 2006