| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,747,605 – 6,747,866 |
| Length | 261 |
| Max. P | 0.986428 |
| Location | 6,747,605 – 6,747,721 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.23 |
| Mean single sequence MFE | -34.65 |
| Consensus MFE | -27.26 |
| Energy contribution | -27.95 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.778456 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6747605 116 + 27905053 CGUCUGAGAUGGCGAAUCA----GCGGGAGCGACAGAGACAGCCACCUGGGCGCUAAGCCAAAUAAAGCUUUUGCUAAAAAUCAAACAAAACGAAUCGAGAUGCGAUUCGCCACGGAAAU ..((((...((((((((((----((((((((........(((....)))(((.....))).......)))))))))....(((................)))..)))))))))))))... ( -35.19) >DroSec_CAF1 11871 114 + 1 CGACUGAGAUGGCGAAUCA----G--GGAGCGAAAGAGACAGCCAGCUGGGCGCUAAGCCAAAUAAAGCUUUCGCUAAAAAUCAAACAAAACGAAUCGGGAUGCGAUUCGGCACGGAAAU ((.((((.........)))----)--..((((((((...(((....)))(((.....)))........))))))))...............(((((((.....)))))))...))..... ( -31.90) >DroSim_CAF1 16183 116 + 1 CGACUGAGAUGGCGAAUCA----GCGGGAGCGACAGAGACAGCCAGCUGGGCGCUAAGCCAAAUAAAGCUUUCGCUAAAAAUCAAACAAAACGAAUCGAGAUGCGAUUCGGCACGGAAAU ...(((.(((.....)))(----(((..(((........(((....)))(((.....))).......)))..))))...............(((((((.....)))))))...))).... ( -34.50) >DroYak_CAF1 7941 120 + 1 CGACUGAGAUGGCGCAUCAUGGCGCGCGAGCGACAGAGACAGCCAGCUGGGCGCUAAGCCAAAUAAAGCUUUCGCUAAAAAUCAAACAAAACGCAUUGGGAUGCGAUUCGGGUCGGAAAU (((((..((...((((((.((.(((....))).))((..(((....)))((((..((((........)))).)))).....))................))))))..)).)))))..... ( -37.00) >consensus CGACUGAGAUGGCGAAUCA____GCGGGAGCGACAGAGACAGCCAGCUGGGCGCUAAGCCAAAUAAAGCUUUCGCUAAAAAUCAAACAAAACGAAUCGAGAUGCGAUUCGGCACGGAAAU ...(((.(((.....))).....((((((((........(((....)))(((.....))).......))))))))................(((((((.....)))))))...))).... (-27.26 = -27.95 + 0.69)
| Location | 6,747,641 – 6,747,748 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.72 |
| Mean single sequence MFE | -34.44 |
| Consensus MFE | -29.81 |
| Energy contribution | -30.12 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.87 |
| SVM decision value | 2.04 |
| SVM RNA-class probability | 0.986428 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6747641 107 + 27905053 AGCCACCUGGGCGCUAAGCCAAAUAAAGCUUUUGCUAAAAAUCAAACAAAACGAAUCGAGAUGCGAUUCGCCACGGAAAUUGGAGG-------------GGUGCGGCGAGCUGGGAAAAA .....((..(.((((..(((......(((....)))...............(((((((.....)))))))(((.......)))...-------------)))..))))..)..))..... ( -28.60) >DroSec_CAF1 11905 107 + 1 AGCCAGCUGGGCGCUAAGCCAAAUAAAGCUUUCGCUAAAAAUCAAACAAAACGAAUCGGGAUGCGAUUCGGCACGGAAAUUGGAGG-------------GGUGCGGCGAGCUGGGAAGAA ..((((((.(.(((....((((....(((....)))...............(((((((.....))))))).........))))...-------------...))).).))))))...... ( -35.00) >DroSim_CAF1 16219 107 + 1 AGCCAGCUGGGCGCUAAGCCAAAUAAAGCUUUCGCUAAAAAUCAAACAAAACGAAUCGAGAUGCGAUUCGGCACGGAAAUUGGAGG-------------GGUGCGGCGAGCUGGGAAAAA ..((((((.(.(((....((((....(((....)))...............(((((((.....))))))).........))))...-------------...))).).))))))...... ( -34.90) >DroYak_CAF1 7981 120 + 1 AGCCAGCUGGGCGCUAAGCCAAAUAAAGCUUUCGCUAAAAAUCAAACAAAACGCAUUGGGAUGCGAUUCGGGUCGGAAAUUGGAGGGGGUGUGUGAGGGGGUGCGUCGAGCUGGGAAAAA ..((((((.(((((....((.......(((..(.((((...((..((....(((((....)))))......))..))..)))).)..))).......))...))))).))))))...... ( -39.24) >consensus AGCCAGCUGGGCGCUAAGCCAAAUAAAGCUUUCGCUAAAAAUCAAACAAAACGAAUCGAGAUGCGAUUCGGCACGGAAAUUGGAGG_____________GGUGCGGCGAGCUGGGAAAAA ..((((((.(.(((...(((......(((....)))...............(((((((.....))))))).............................)))))).).))))))...... (-29.81 = -30.12 + 0.31)
| Location | 6,747,641 – 6,747,748 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.72 |
| Mean single sequence MFE | -28.65 |
| Consensus MFE | -25.00 |
| Energy contribution | -25.75 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.970906 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6747641 107 - 27905053 UUUUUCCCAGCUCGCCGCACC-------------CCUCCAAUUUCCGUGGCGAAUCGCAUCUCGAUUCGUUUUGUUUGAUUUUUAGCAAAAGCUUUAUUUGGCUUAGCGCCCAGGUGGCU ........(((.((((((...-------------...............((((((((.....))))))))((((((........)))))).)).......(((.....)))..))))))) ( -26.50) >DroSec_CAF1 11905 107 - 1 UUCUUCCCAGCUCGCCGCACC-------------CCUCCAAUUUCCGUGCCGAAUCGCAUCCCGAUUCGUUUUGUUUGAUUUUUAGCGAAAGCUUUAUUUGGCUUAGCGCCCAGCUGGCU ......((((((.(.(((...-------------................(((((((.....)))))))....((..(((....(((....)))..)))..))...))).).)))))).. ( -30.20) >DroSim_CAF1 16219 107 - 1 UUUUUCCCAGCUCGCCGCACC-------------CCUCCAAUUUCCGUGCCGAAUCGCAUCUCGAUUCGUUUUGUUUGAUUUUUAGCGAAAGCUUUAUUUGGCUUAGCGCCCAGCUGGCU ......((((((.(.(((...-------------................(((((((.....)))))))....((..(((....(((....)))..)))..))...))).).)))))).. ( -30.00) >DroYak_CAF1 7981 120 - 1 UUUUUCCCAGCUCGACGCACCCCCUCACACACCCCCUCCAAUUUCCGACCCGAAUCGCAUCCCAAUGCGUUUUGUUUGAUUUUUAGCGAAAGCUUUAUUUGGCUUAGCGCCCAGCUGGCU ......((((((.(.(((.................................(((.(((((....))))).)))((..(((....(((....)))..)))..))...))).).)))))).. ( -27.90) >consensus UUUUUCCCAGCUCGCCGCACC_____________CCUCCAAUUUCCGUGCCGAAUCGCAUCCCGAUUCGUUUUGUUUGAUUUUUAGCGAAAGCUUUAUUUGGCUUAGCGCCCAGCUGGCU ......((((((.(.(((................................(((((((.....)))))))....((..(((....(((....)))..)))..))...))).).)))))).. (-25.00 = -25.75 + 0.75)
| Location | 6,747,681 – 6,747,788 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.16 |
| Mean single sequence MFE | -22.11 |
| Consensus MFE | -15.68 |
| Energy contribution | -16.18 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.71 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.806903 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6747681 107 - 27905053 UGCAUUUGCAUCGCACAAAACGAUUCAAUUUCGCUUUUCCUUUUUCCCAGCUCGCCGCACC-------------CCUCCAAUUUCCGUGGCGAAUCGCAUCUCGAUUCGUUUUGUUUGAU (((....)))(((.(((((((((.((......(((.............)))(((((((...-------------............)))))))..........)).))))))))).))). ( -27.58) >DroSec_CAF1 11945 107 - 1 UGCAUUUGCAUCGCACAAAACAAUUCAAUUUCGCUUUUCCUUCUUCCCAGCUCGCCGCACC-------------CCUCCAAUUUCCGUGCCGAAUCGCAUCCCGAUUCGUUUUGUUUGAU (((....)))(((.(((((((...................................((((.-------------............)))).((((((.....))))))))))))).))). ( -20.12) >DroSim_CAF1 16259 107 - 1 UGCAUUUGCAUCGCACAAAACGAUUCAAUUUCGCUUUUCCUUUUUCCCAGCUCGCCGCACC-------------CCUCCAAUUUCCGUGCCGAAUCGCAUCUCGAUUCGUUUUGUUUGAU (((....)))(((.(((((((((.((......(((.............)))(((..((((.-------------............)))))))..........)).))))))))).))). ( -21.44) >DroYak_CAF1 8021 120 - 1 UGCAUUUGCAUCGCACAAAACGAUUCAAUUUCGCUUUUCCUUUUUCCCAGCUCGACGCACCCCCUCACACACCCCCUCCAAUUUCCGACCCGAAUCGCAUCCCAAUGCGUUUUGUUUGAU (((....)))(((.((((((((((((......(((.............)))(((...............................)))...)))))((((....))))))))))).))). ( -19.30) >consensus UGCAUUUGCAUCGCACAAAACGAUUCAAUUUCGCUUUUCCUUUUUCCCAGCUCGCCGCACC_____________CCUCCAAUUUCCGUGCCGAAUCGCAUCCCGAUUCGUUUUGUUUGAU (((....)))(((.(((((((............................((.....)).................................((((((.....))))))))))))).))). (-15.68 = -16.18 + 0.50)
| Location | 6,747,748 – 6,747,866 |
|---|---|
| Length | 118 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.72 |
| Mean single sequence MFE | -36.53 |
| Consensus MFE | -31.27 |
| Energy contribution | -32.40 |
| Covariance contribution | 1.13 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.843905 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6747748 118 + 27905053 GGAAAAGCGAAAUUGAAUCGUUUUGUGCGAUGCAAAUGCAAGGCGCAUUGGGGAUCACGACCUGUACGCGGUGGUCCCCAUCCACCAUCUCUACACUGAGCAACAAGAUGUUGAGUAA-- ((((((((((.......)))))))((((..(((....)))..))))..((((((((((............)))))))))))))...........(((.((((......)))).)))..-- ( -38.60) >DroSec_CAF1 12012 118 + 1 GGAAAAGCGAAAUUGAAUUGUUUUGUGCGAUGCAAAUGCAAGGCGCAUUGGGGAUCACGACCUGUACGCGGUGGUCCCCAUCCAACAUCUCUACACUGAGCAAAAAAAUUUUGAGUAA-- .......(((((((...((((((.(((.((((..(((((.....)))))(((((((((............)))))))))......))))....))).))))))...))))))).....-- ( -34.70) >DroSim_CAF1 16326 118 + 1 GGAAAAGCGAAAUUGAAUCGUUUUGUGCGAUGCAAAUGCAAGGCGCAUUGGGGAUCACGACCUGUACGCGGUGGUCCCCAUCCAACAUCUCUACACUGAGCAAAAAAAUGUUGAGUAA-- ((((((((((.......)))))))((((..(((....)))..))))..((((((((((............)))))))))))))...........(((.((((......)))).)))..-- ( -38.60) >DroYak_CAF1 8101 117 + 1 GGAAAAGCGAAAUUGAAUCGUUUUGUGCGAUGCAAAUGCAAGGCGCAUUGGGGAUCACGACCUGUACGCGG--G-UCCCAUCCACCAUCUCUACACUGAGCCAAAGAGCGUUGACUGAAA ...(((((((.......)))))))((.((((((.(((((.....)))))((((((...((((((....)))--)-))..)))).))..(((......))).......))))))))..... ( -34.20) >consensus GGAAAAGCGAAAUUGAAUCGUUUUGUGCGAUGCAAAUGCAAGGCGCAUUGGGGAUCACGACCUGUACGCGGUGGUCCCCAUCCAACAUCUCUACACUGAGCAAAAAAAUGUUGAGUAA__ ((((((((((.......)))))))((((..(((....)))..))))..((((((((((............)))))))))))))...........(((.((((......)))).))).... (-31.27 = -32.40 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:27 2006