| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,745,048 – 6,745,149 |
| Length | 101 |
| Max. P | 0.999605 |
| Location | 6,745,048 – 6,745,149 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 68.33 |
| Mean single sequence MFE | -34.78 |
| Consensus MFE | -21.22 |
| Energy contribution | -22.44 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.61 |
| SVM decision value | 3.78 |
| SVM RNA-class probability | 0.999605 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6745048 101 + 27905053 GCAAGCCCCACGAGUUGGGGGCACUCGCCG----------------CCCCUAACCGAAAAACCCCCGUAGGCAA---CCUUCGAACAAACUACGGUUUUCGGCGGCCCUGCAUGCUGCCC (((.((....((.(((((((((.......)----------------))))))))))..........(((((...---((.(((((..(((....)))))))).)).)))))..))))).. ( -38.40) >DroSec_CAF1 9762 83 + 1 GCAAGCCCCACGAGUUGGGGGCACUCGCCG----------------UCCGUAAGCGAAAAACCCCCC---------------------CCUGGGGUUUUCGGCAGCUCUGCAUGCUGCCC (.((((((((.(.(..(((((...((((..----------------.......))))....))))).---------------------)))))))))).)((((((.......)))))). ( -36.30) >DroYak_CAF1 5419 118 + 1 GCAAGCCCCACGAGUUGGGCACCCUCGCCCCCUCUUCCCCUCACAACCCCUAACCGAAAAACCC-CGUAGGCACCCCCCUUCGAACAAUCUGC-GUUUUCGGCGGCUCUGCACGCUGCCC (((((((....(((..((((......)))).)))...................(((((((....-((((((.................)))))-)))))))).)))).)))......... ( -29.63) >consensus GCAAGCCCCACGAGUUGGGGGCACUCGCCG________________CCCCUAACCGAAAAACCCCCGUAGGCA____CCUUCGAACAAACUGCGGUUUUCGGCGGCUCUGCAUGCUGCCC ((.(((((((.....)))))...)).))...........................(((((....((((((...................)))))))))))((((((.......)))))). (-21.22 = -22.44 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:19 2006