| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 946,051 – 946,163 |
| Length | 112 |
| Max. P | 0.570550 |
| Location | 946,051 – 946,163 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 84.87 |
| Mean single sequence MFE | -30.74 |
| Consensus MFE | -21.34 |
| Energy contribution | -21.32 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.570550 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 946051 112 - 27905053 --CAAAUCCUCACAGUCAUCUUCCAUUUCGGGCUCAGGCAGCGGCACUCAGUCCACUUGGCAUUUGCAUUUUCUGGAUAAUUCAUUAAAUGCAGGGCUGCUUCUUGGCUGCCUG --..........................((((((((((.((((((.....(((.....))).(((((((((..((((...))))..))))))))))))))).)))))..))))) ( -32.10) >DroSec_CAF1 35095 108 - 1 --CAAAUCCUCACAGUCAUCUUCCAUUUCGGGCUCAGACGGCGGC----GGUCCACUUGGCAUUUGCAUUUUCUGGAUAAUUCAUUAAAUGCAGGGCUUCUUCUCGGCUGCCUG --............(((....(((.....)))....)))((((((----.(.......(((.(((((((((..((((...))))..))))))))))))......).)))))).. ( -30.62) >DroSim_CAF1 41108 108 - 1 --CAAAUCCUCACAGUCAUCUUCCAUUUCGGGCUCAGACGGCGGC----GGUCCACUUGGCAUUUGCAUUUUCUGGAUAAUUCAUUAAAUGCAGGGCUGCUUCUCGGCUGCCUG --............(((.((((((.....)))...))).)))(((----((((.....(((((((((((((..((((...))))..)))))))))..))))....))))))).. ( -31.10) >DroYak_CAF1 55941 108 - 1 --CAAAUCCUCACAGUCAUCUUCCAUUUCAGGCUCAGACGGUGGC----GGUCCACUUGGCAUUUGCAUUUUCUGGAUAAUUCAUUAAAUGCAGGGCUGCUUCUUGACUGCCUG --.........((.(((.....((......))....))).))(((----((((.....(((((((((((((..((((...))))..)))))))))..))))....))))))).. ( -29.00) >DroAna_CAF1 32707 89 - 1 GCUAAGUCCUUGCAGUCAUC---------------------CGGC----GGUCCAUUUGGCAUUUGCAUUUUCUGGAUAAUUCAUUAAAUGCAGAGCCGCUUCUUGGCUGCCUG ...........(((((((..---------------------.(((----(((((....))..(((((((((..((((...))))..)))))))))))))))...)))))))... ( -30.90) >consensus __CAAAUCCUCACAGUCAUCUUCCAUUUCGGGCUCAGACGGCGGC____GGUCCACUUGGCAUUUGCAUUUUCUGGAUAAUUCAUUAAAUGCAGGGCUGCUUCUUGGCUGCCUG ............(((((.....((......)).......((((((.....(((.....))).(((((((((..((((...))))..)))))))))))))))....))))).... (-21.34 = -21.32 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:29 2006