Locus 2388

Sequence ID 3R_DroMel_CAF1
Location 6,742,690 – 6,742,801
Length 111
Max. P 0.873252
window3858

overview

Window 8

Location 6,742,690 – 6,742,801
Length 111
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 93.22
Mean single sequence MFE -19.09
Consensus MFE -16.52
Energy contribution -16.77
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.93
Structure conservation index 0.87
SVM decision value 0.88
SVM RNA-class probability 0.873252
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6742690 111 + 27905053
ACUGCAUUUGUGACACACACUGUCAUUUCCUUACACACUGUCUAUAUACCCAUUUUUAUCCUGUAUCCCGGACAUCGUUGCUUUCAUUAGCAGCUACCACUUUUUCAG---------UUC
((((.....((((((.....))))))............(((((..((((.............))))...)))))..((((((......))))))...........)))---------).. ( -17.62)
>DroSec_CAF1 7473 111 + 1
ACUGCAUUUGUGACAUACACUGUCAUGUCCUUACACUCUGUCUAUAUCCCCAUUUUUAUCCUGUAUCCCGGACAUCGUUGCUUUCAUUAGCAGCUACCACUUUUUCAG---------UUG
((((.....((((((.....))))))((((.((((..........................))))....))))...((((((......))))))...........)))---------).. ( -18.97)
>DroSim_CAF1 11814 111 + 1
ACUGCAUUUGUGACAUACACUGUCAUGUCCUUACACUCUGUCUAUAUCCCCAUUUUUAUCCUGUAUCCCGGACAUCGUUGCUUUCAUUAGCAGCUACCACUUUUUCAG---------UUG
((((.....((((((.....))))))((((.((((..........................))))....))))...((((((......))))))...........)))---------).. ( -18.97)
>DroYak_CAF1 2791 120 + 1
ACUGCAUUUGUGACACACACUGUCAUGUCCUUACACUCUGUCUAUAUCCCCAUUUUUAUCCUGUAUCCCGGACAUCGUUGCUUUCAUUAGCAGCUACCACUUUUUCAGAAUGGCCAUUCC
...((....((((((.....)))))).......((.((((..................(((........)))....((((((......))))))...........)))).))))...... ( -20.80)
>consensus
ACUGCAUUUGUGACACACACUGUCAUGUCCUUACACUCUGUCUAUAUCCCCAUUUUUAUCCUGUAUCCCGGACAUCGUUGCUUUCAUUAGCAGCUACCACUUUUUCAG_________UUC
.(((.....(((............((((((.((((..........................))))....)))))).((((((......))))))...))).....)))............ (-16.52 = -16.77 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:11 2006