Locus 2387

Sequence ID 3R_DroMel_CAF1
Location 6,742,471 – 6,742,573
Length 102
Max. P 0.935851
window3857

overview

Window 7

Location 6,742,471 – 6,742,573
Length 102
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 85.14
Mean single sequence MFE -22.78
Consensus MFE -18.20
Energy contribution -17.95
Covariance contribution -0.25
Combinations/Pair 1.15
Mean z-score -2.17
Structure conservation index 0.80
SVM decision value 1.25
SVM RNA-class probability 0.935851
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6742471 102 + 27905053
------------------CUUCAGAGACUUUCUGUGAUUGCUCGAUCUCCAGUUCAUUAUCUUUUAUUGGUUUCGUCAAAGGCUUAUUGGCCUUUCCAAUUGAUAUGAUCUGGCUUUCUU
------------------..(((.((.....)).)))......((...((((.((((.(((....(((((.......(((((((....)))))))))))).))))))).))))...)).. ( -26.41)
>DroSec_CAF1 7266 102 + 1
------------------CUUCAGAGACUUUCUGUGAUUGCUGGCUCUUCAGUUCAUUAUCUUUUAUUGGUUUCGUCAAAGGCUUAUUGGCAUUUCCAAUUGAUAUGAUCUGGCUUUCUU
------------------..(((.((.....)).)))..(..(((....(((.((((.(((....(((((....(((((.......)))))....))))).))))))).))))))..).. ( -20.20)
>DroSim_CAF1 11607 102 + 1
------------------CUUCAGAGACUUUCUGUGAUUGCUCGCUCUUCAGUUCAUUAUCUUUUAUUGGUUUCGUCAAAGGCUUAUUGGCAUUUCCAAUUGAUAUGAUCUGGCUUUCUU
------------------....(((((......((((....))))...((((.((((.(((....(((((....(((((.......)))))....))))).))))))).)))).))))). ( -20.10)
>DroYak_CAF1 2558 120 + 1
CUUUUCUUUCUUUAACAACUUCAAAGGCUUUCUGUGAUUGCCCGCUCUUCAGUUGAUUAUCCUUUAUUGGUUUCGCUAGAAGCUCAUUGGCAUUUCCAACUGAUAUGAUCUGGCUUUCUU
...................................((..(((.(.((.(((((((...((((...((.((((((....)))))).)).)).))...)))))))...)).).)))..)).. ( -24.40)
>consensus
__________________CUUCAGAGACUUUCUGUGAUUGCUCGCUCUUCAGUUCAUUAUCUUUUAUUGGUUUCGUCAAAGGCUUAUUGGCAUUUCCAAUUGAUAUGAUCUGGCUUUCUU
....................(((.((.....)).)))...........((((.((((.(((....(((((....(((((.......)))))....))))).))))))).))))....... (-18.20 = -17.95 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:10 2006