Locus 2386

Sequence ID 3R_DroMel_CAF1
Location 6,741,654 – 6,741,774
Length 120
Max. P 0.945795
window3856

overview

Window 6

Location 6,741,654 – 6,741,774
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 97.92
Mean single sequence MFE -45.15
Consensus MFE -42.71
Energy contribution -43.03
Covariance contribution 0.31
Combinations/Pair 1.03
Mean z-score -2.62
Structure conservation index 0.95
SVM decision value 1.36
SVM RNA-class probability 0.945795
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6741654 120 + 27905053
UUUUGCCGCUGAAGAGCGCGGUGCUUAGAGGGACUUAUGCAAAUAUUGGAGGAGUCAUUCUGGGCGCCAACGUCAACUUCAGCGUUAUAGCCAUCUCAUUGCCAUCGUCGCCGCAAAUCU
.(((((((((((((.(((.(((((((((((.(((((.(.((.....)).).))))).)))))))))))..)))...)))))))).....(.((......)).).........)))))... ( -41.20)
>DroSec_CAF1 6410 120 + 1
UUUUGCCGCUGAAGAGCGCGGUGCUUAGAGGGACUUAUGCAAAUAUUGGAGGAGUCAUCCUGGGCGCCAACGUCAACUUCAGCGUUAUAGCCAUCUCAUUGGCAUCGACGCCGCAAAUCU
.(((((((((((((.(((.(((((((((.(((((((.(.((.....)).).))))).)))))))))))..)))...)))))))).....((((......)))).........)))))... ( -45.70)
>DroSim_CAF1 10744 120 + 1
UUUUGCCGCUGAAGAGCGCGGUGCUUAGAGGGACUUAUGCAAAUAUUGGAGGAGUCAUCCUGGGCGCCAACGUCAACUUCAGCGUUAUAGCCAUCUCAUUGGCAUCGUCGCCGCAAAUCU
.(((((((((((((.(((.(((((((((.(((((((.(.((.....)).).))))).)))))))))))..)))...)))))))).....((((......)))).........)))))... ( -45.70)
>DroYak_CAF1 1664 120 + 1
UUUUGGCGCUGAAGAGCGCGGCGCUUAGAGGGACUUAUGCAAAUAUUGGAGGAGUCAUCCUGGGCGCCAACGUCAACUUCAGCGUUAUAGCCAUCUCAUUGGCAUCGUCGCCGCAAAUCU
....((((((((((.(((.(((((((((.(((((((.(.((.....)).).))))).)))))))))))..)))...)))))))......((((......))))......)))........ ( -48.00)
>consensus
UUUUGCCGCUGAAGAGCGCGGUGCUUAGAGGGACUUAUGCAAAUAUUGGAGGAGUCAUCCUGGGCGCCAACGUCAACUUCAGCGUUAUAGCCAUCUCAUUGGCAUCGUCGCCGCAAAUCU
.(((((((((((((.(((.(((((((((...(((((.(.((.....)).).)))))...)))))))))..)))...)))))))).....((((......)))).........)))))... (-42.71 = -43.03 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:09 2006