Locus 2383

Sequence ID 3R_DroMel_CAF1
Location 6,739,585 – 6,739,705
Length 120
Max. P 0.694127
window3848

overview

Window 8

Location 6,739,585 – 6,739,705
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 99.44
Mean single sequence MFE -22.33
Consensus MFE -22.30
Energy contribution -22.30
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.55
Structure conservation index 1.00
SVM decision value 0.34
SVM RNA-class probability 0.694127
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6739585 120 - 27905053
AUAAUACCCUGCCGCAUAAAUCAUUAAAACUUGCCACAUUACGCAUACGCCGCGUUGCAGCAGCCAGCAUAAAGUGUCUAUAAAAACGCUUAAAAUGUGUGAACACAAAAGCUUCAAACU
........((((.(((.....((........)).......((((.......))))))).))))..(((...((((((........))))))....((((....))))...)))....... ( -22.30)
>DroSec_CAF1 4422 120 - 1
AUAAUACCCUGCCGCAUAAAUCAUUAAAACUUGCCACAUUACGCAUACGCCGCGUUGCAGCAGCCAGCAUAAAGUGUCUAUAAAAACGCUUAAAAUGUGUGAACACAAAAGCUUCAAACU
........((((.(((.....((........)).......((((.......))))))).))))..(((...((((((........))))))....((((....))))...)))....... ( -22.30)
>DroSim_CAF1 8783 120 - 1
AUAAUACCCUGCCGCAUAAAUCAUUAAAACUUGCCACAUUACGCAUACGCCGCGUUGCAGCAGCCAGCAUAAAGUGUCUAUAAGAACGCUUAAAAUGUGUGAACACAAAAGCUUCAAACU
........((((.(((.....((........)).......((((.......))))))).))))..(((...(((((((.....).))))))....((((....))))...)))....... ( -22.40)
>consensus
AUAAUACCCUGCCGCAUAAAUCAUUAAAACUUGCCACAUUACGCAUACGCCGCGUUGCAGCAGCCAGCAUAAAGUGUCUAUAAAAACGCUUAAAAUGUGUGAACACAAAAGCUUCAAACU
........((((.(((.....((........)).......((((.......))))))).))))..(((...((((((........))))))....((((....))))...)))....... (-22.30 = -22.30 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:02 2006