| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,739,389 – 6,739,505 |
| Length | 116 |
| Max. P | 0.513566 |
| Location | 6,739,389 – 6,739,505 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.09 |
| Mean single sequence MFE | -41.93 |
| Consensus MFE | -30.84 |
| Energy contribution | -31.40 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.74 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.513566 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6739389 116 + 27905053 CGCAGGGGGGGG--GGUAGGGGUGC--UGGAGGUAGGGUAAAAGUUUGCUGUGUGCAACAAAAUAUUGAAAAUUAAGACCCAUCCAAAGUCUUCUCUGCUCCGCCUUUCCCUUCAUAAAG .(.((((((.((--((((((((.((--(...((..((((...(((((...((((........))))...)))))...))))..))..)))..)))))))))).))...)))).)...... ( -39.00) >DroSec_CAF1 4223 119 + 1 CGCGGGGUGGUGGCGAAAGGGGUGCUCUAGGGGUAGGGUAAAAGUUUGCUGUGUGCAACAAAAUAUUGAAAAUUAAGACCCAGCCAAAGUCUUCUCUGCACCGCCA-UCCCUUCAUAAAG ...((((((((((.(...((((....((...(((.((((...(((((...((((........))))...)))))...)))).)))..))....)))).).))))))-))))......... ( -40.80) >DroSim_CAF1 8584 119 + 1 CGCGGGGGGGCGGCGAGAGGGGUGCUCUGGAGGUAGGGUAAAAGUUUGCUGUGUGCAACAAAAUAUUGAAAAUUAAGACCCAGCCAAAGUCUUCUCUGCACCGCCU-UCCCUUCAUAAAG ...((((((((((.((((((((.(((.(((.....((((...(((((...((((........))))...)))))...))))..))).)))))))))).).))))))-))))......... ( -46.00) >consensus CGCGGGGGGGCGGCGAAAGGGGUGCUCUGGAGGUAGGGUAAAAGUUUGCUGUGUGCAACAAAAUAUUGAAAAUUAAGACCCAGCCAAAGUCUUCUCUGCACCGCCU_UCCCUUCAUAAAG .(.((((((((((.(...((((....((...(((.((((...(((((...((((........))))...)))))...)))).)))..))....)))).).))))))..)))).)...... (-30.84 = -31.40 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:01 2006