Locus 238

Sequence ID 3R_DroMel_CAF1
Location 940,520 – 940,633
Length 113
Max. P 0.871867
window426

overview

Window 6

Location 940,520 – 940,633
Length 113
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 89.73
Mean single sequence MFE -30.65
Consensus MFE -23.32
Energy contribution -24.24
Covariance contribution 0.92
Combinations/Pair 1.11
Mean z-score -2.07
Structure conservation index 0.76
SVM decision value 0.87
SVM RNA-class probability 0.871867
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 940520 113 - 27905053
GUCGCAUGUUCUUGGCAUUUAAUGAGUGCUACGCACAUGAAAAAAUGUUGUGGCAACUAUUGAUUUUCUAAUCGUUUGCGGUCAAUUUAUUGAACUCCCCAAUUAUGCGGCAC
((((((((...((((..((((((((((((((((.((((......))))))))))................((((....))))..))))))))))....)))).)))))))).. ( -32.80)
>DroSec_CAF1 29579 110 - 1
GUCGCAUGUUCUUGGCAUUUAAUGAGUGCUACGCACAUGGAAAAAUG---UGGAAAAUAUUGAUUUUCUAAUCGUUUGCGGUCAAUUUAUUGAACUCCCCAAUUAUGCGGCAC
((((((((...((((..((((((((((....((((.((((.......---((((((((....)))))))).)))).))))....))))))))))....)))).)))))))).. ( -32.80)
>DroSim_CAF1 35523 113 - 1
GUCGCAUGUUCUUGGCAUUUAAUGAGUGCUACGCACAUGGAAAAAUGUUGUGGCAAGUAUUGAUUUUCUAAUCGUUUGCGGUCAAUUUAUUGAACUCCCCAAUUAUGCGGCAC
((((((((...((((..((((((((((((((((.((((......))))))))))..(((.(((((....)))))..))).....))))))))))....)))).)))))))).. ( -34.70)
>DroEre_CAF1 30288 113 - 1
GUCGCAUGUUCUUGGCAUUUAAUGAGUGCUACGCACACGGAGAAAACUAGUGGCAAGUAUCGAUUUUCUAAUCGUUUGCGGUCAAUUUAUUGAGCUCCCCAAUUAUACGGCAC
((((..(((.(.((((((((...)))))))).).))).((((........((((..(((.(((((....)))))..))).))))..........)))).........)))).. ( -26.67)
>DroYak_CAF1 50166 107 - 1
------UGUUCUUGGCAUUUAAUGAGUGCUACGCACACGGAAAGAAGUAUUGGCAAGUAUUGAUUUUCUAUUCGUAUGCGGCCAAUUUAUUGAACUCCCCAAUUAUAUAGCAC
------(((..((((..((((((((((....((((.(((((.(((((.((..(......)..))))))).))))).))))....))))))))))....))))..)))...... ( -26.30)
>consensus
GUCGCAUGUUCUUGGCAUUUAAUGAGUGCUACGCACAUGGAAAAAUGUAGUGGCAAGUAUUGAUUUUCUAAUCGUUUGCGGUCAAUUUAUUGAACUCCCCAAUUAUGCGGCAC
((((((((...((((..((((((((((....((((.((((..........(((.((((....)))).))).)))).))))....))))))))))....)))).)))))))).. (-23.32 = -24.24 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:28 2006