Locus 2379

Sequence ID 3R_DroMel_CAF1
Location 6,738,324 – 6,738,444
Length 120
Max. P 0.750157
window3838

overview

Window 8

Location 6,738,324 – 6,738,444
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 98.89
Mean single sequence MFE -23.20
Consensus MFE -22.55
Energy contribution -22.33
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.74
Structure conservation index 0.97
SVM decision value 0.47
SVM RNA-class probability 0.750157
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6738324 120 + 27905053
UUCGCAUGAUUUAUCGCUUGGAAUUCACUUCCCACUAUCUUCUUCCCUUUCUGCAGAUUCCGAUUGCAAUUUGCUUUGGCCAUGCAUAAUUCAUGCAUAAUUAUUGGAAGCAAACAAUGC
...((((((.((((.((.(((...............((((.(..........).)))).((((..((.....)).))))))).)))))).)))))).....(((((........))))). ( -23.90)
>DroSec_CAF1 3158 120 + 1
UUCGCAUGAUUUAUCGCUUGGAAUUCACUUCCCACUAUCUUCUUCCCUUUCUGCAGAUUCCGAUUGCAAUUUGCUUUGGCCAUGCAUAAUUCAUGCAUAAUUAUUGCAAGCAAAUAAUGC
...((((((.((((.((.(((...............((((.(..........).)))).((((..((.....)).))))))).)))))).))))))...((((((.......)))))).. ( -23.10)
>DroSim_CAF1 7513 120 + 1
UUCGCAUGAUUUAUCGCUUGGAAUUCACUUCCCACUAUCUUCUUCCCUUUCUGCAGAUUCCGAUUGCAAUUUGCUUUGGCCAUGCAUAAUUCAUGCAUAAUUAUUGCAAGCAAACAAUGC
...((((((.((((.((.(((...............((((.(..........).)))).((((..((.....)).))))))).)))))).)))))).....(((((........))))). ( -22.60)
>consensus
UUCGCAUGAUUUAUCGCUUGGAAUUCACUUCCCACUAUCUUCUUCCCUUUCUGCAGAUUCCGAUUGCAAUUUGCUUUGGCCAUGCAUAAUUCAUGCAUAAUUAUUGCAAGCAAACAAUGC
...((((((.((((.((.(((...............((((.(..........).)))).((((..((.....)).))))))).)))))).)))))).....(((((........))))). (-22.55 = -22.33 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:52 2006