| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,737,682 – 6,737,802 |
| Length | 120 |
| Max. P | 0.929150 |
| Location | 6,737,682 – 6,737,802 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.56 |
| Mean single sequence MFE | -32.37 |
| Consensus MFE | -30.93 |
| Energy contribution | -30.93 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.96 |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.929150 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6737682 120 - 27905053 UUGCCAAAUAAAUAUGCAUAUACAUAUAGUAUGCACAUAUUUGUAUUCAAAAGCAGGCGGACGCGGGCAGUCUGUUGUUAUGCAAUCGAAAUAUUCGGUUGGGCAGCUCAUUGAAUUUAA (((((..(((((((((..(((((.....)))))..))))))))).......(((((.(((((.......))))))))))...(((((((.....)))))))))))).............. ( -32.60) >DroSec_CAF1 2520 120 - 1 UGGCCAAAUAAGUAUGCAUAUACAUAUAGUAUGUACAUAUUUGUAUUCAAAAGCAUGCGGAAGCGGGCAGUCUGUUGUUAUGCAAUUGGAAUAUUCGGUUGGGCAGCUCAUUGAAUUUAA .......(((((((((.((((((.....)))))).)))))))))((((((..((.(((....))).)).....((((((...((((((((...))))))))))))))...)))))).... ( -32.50) >DroSim_CAF1 6857 120 - 1 UGACCAAAUAAGUAUGCAUAUACAUAUAGUAUGUACAUAUUUGUAUUCAAAAGCAUGCGGACGCGGGCAGUCUGUUGUUAUGCAAUCGGAAUAUUCGGUUGGGCAGCUCAUUGAAUUUAA .......(((((((((.((((((.....)))))).)))))))))((((((.(((.(((((((.......)))).........((((((((...)))))))).))))))..)))))).... ( -32.00) >consensus UGGCCAAAUAAGUAUGCAUAUACAUAUAGUAUGUACAUAUUUGUAUUCAAAAGCAUGCGGACGCGGGCAGUCUGUUGUUAUGCAAUCGGAAUAUUCGGUUGGGCAGCUCAUUGAAUUUAA .......(((((((((.((((((.....)))))).)))))))))((((((..((.(((....))).)).....((((((...((((((((...))))))))))))))...)))))).... (-30.93 = -30.93 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:51 2006