| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,736,612 – 6,736,731 |
| Length | 119 |
| Max. P | 0.526497 |
| Location | 6,736,612 – 6,736,731 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.68 |
| Mean single sequence MFE | -31.63 |
| Consensus MFE | -25.35 |
| Energy contribution | -25.02 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.80 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.526497 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6736612 119 - 27905053 ACAAAGAGCGAUUUAUUCGAACUUUUUCCUCUGCCUUGUGUGUGUGUUUGAUUUCCAUGCGAGAGGGUAUUAAAUACAUAUUUGAAGAUCG-GCAAAAAAUGUUCGAGUGUCAAGGCUCA .....((((....((((((((((((((....((((....(((((((((((((.(((........))).)))))))))))))..(.....))-)))))))).))))))))).....)))). ( -35.90) >DroSec_CAF1 1540 109 - 1 ACAAAGAGCGAUUUAUUUGAACUUUUUCCCCUGGCUU-----UGUGUGUGAUUUCCAUGCGA--GGGCAUUAAA----UAUUUGAAGAUCGCGCAAAAAAUGUUCGAGUGUCAAGGCUCA .....((((....(((((((...........((.(((-----((((((.(....))))))))--)).)))))))----))(((((...(((.(((.....))).)))...))))))))). ( -27.40) >DroSim_CAF1 5815 109 - 1 ACAAAGAGCGAUUUAUUCGAACUUUUUCCUCUGGCUU-----UGUGUGUGAUUUCCAUGCGA--GGGCAUUAAA----UAUUUGAGGAUCGCGCAAAAAAUGUUCGAGUGUCAAGGCUCA .....((((....((((((((((((((((((((.(((-----((((((.(....))))))))--)).)).....----.....)))))........)))).))))))))).....)))). ( -31.60) >consensus ACAAAGAGCGAUUUAUUCGAACUUUUUCCUCUGGCUU_____UGUGUGUGAUUUCCAUGCGA__GGGCAUUAAA____UAUUUGAAGAUCGCGCAAAAAAUGUUCGAGUGUCAAGGCUCA .....((((....((((((((((((((.................((((((((((...(((......)))(((((......)))))))))))))))))))).))))))))).....)))). (-25.35 = -25.02 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:46 2006