Locus 2374

Sequence ID 3R_DroMel_CAF1
Location 6,736,273 – 6,736,378
Length 105
Max. P 0.660734
window3830

overview

Window 0

Location 6,736,273 – 6,736,378
Length 105
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 84.79
Mean single sequence MFE -24.55
Consensus MFE -20.17
Energy contribution -20.07
Covariance contribution -0.11
Combinations/Pair 1.07
Mean z-score -1.75
Structure conservation index 0.82
SVM decision value 0.27
SVM RNA-class probability 0.660734
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6736273 105 - 27905053
--ACUUACCC-CAAAAGUGGAAAAUGCAUUCCUGUA------------AAAUGUCACAGCUUUGGUUGGAGUAUUCCGCUCACACAAAAGACAGCCAGCUGCUGGUAGAUUAAUGCAUUU
--.......(-((....))).(((((((((...((.------------...(..(((((((..(((((((((.....)))).(......).)))))))))).))..).)).))))))))) ( -25.20)
>DroSec_CAF1 1189 116 - 1
UCACUUACCCUCAAAAGUGGAAAAUGCAUACCUGUAAAUUCAAAUCUAAAAUGUCACAGCUUU----CGAGUAUUCUGCUCACACAAAAGACAGCCAGCUGCUGGCAGAUUAAUGCAUUU
((((((........)))))).((((((((...((......))(((((....((((........----.((((.....))))........))))(((((...)))))))))).)))))))) ( -25.53)
>DroSim_CAF1 5495 113 - 1
UCAUUUCCCC---AAAGUGGAAAAUGCAUACCUGUAAAUUCAAAUCUAAAAUGUCACAGCUUU----CGAGUAUUCUGCUCACACAAAAGACAGCCAGCUGCUGGCAGAUUAAUGCAUUU
((((((....---.)))))).((((((((...((......))(((((....((((........----.((((.....))))........))))(((((...)))))))))).)))))))) ( -22.93)
>consensus
UCACUUACCC_CAAAAGUGGAAAAUGCAUACCUGUAAAUUCAAAUCUAAAAUGUCACAGCUUU____CGAGUAUUCUGCUCACACAAAAGACAGCCAGCUGCUGGCAGAUUAAUGCAUUU
.(((((........)))))..((((((((.............................(((((.....((((.....)))).....)))).).(((((...)))))......)))))))) (-20.17 = -20.07 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:45 2006