Locus 2373

Sequence ID 3R_DroMel_CAF1
Location 6,735,794 – 6,735,914
Length 120
Max. P 0.962376
window3829

overview

Window 9

Location 6,735,794 – 6,735,914
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 95.54
Mean single sequence MFE -36.70
Consensus MFE -36.42
Energy contribution -35.10
Covariance contribution -1.32
Combinations/Pair 1.16
Mean z-score -2.22
Structure conservation index 0.99
SVM decision value 1.54
SVM RNA-class probability 0.962376
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6735794 120 - 27905053
UAAUCGUUGCUCAGGCGACAUGUUUACGGCGGUGCGUGCAGUUGGCUUGAUGCAUGUUUAUUUUCAGCUGCAAUCGAAUGCUGCAUUUGAGCGUAUAUAUAUUUAUAUGUAUAUCGACAU
.....(((((....)))))(((((((..(((((.(((((((((((...((((......)))).)))))))))..))...)))))...)))))))((((((((....))))))))...... ( -34.00)
>DroSec_CAF1 727 119 - 1
UAAUCGUUGCUCAGGCGACAUGUUUACGGCGGUGCGUGCAGUUGGCUUGAUGCAUGUUUAUUUCCAGCUGCAAUUGAAUGCUGCAU-UGAGCGUAUGUAUAUUUAUAUGUAUACCGACAU
.....(((((....)))))(((((((..(((((.(.(((((((((...((((......)))).)))))))))...)...)))))..-)))))))..((((((......))))))...... ( -35.50)
>DroSim_CAF1 5055 119 - 1
UAAUCGUUGCUCAGGCGACAUAUUUACGGCGGUGCGUGCAGCUGGCUUGAUGCAUGUUUAUUUCCAGCUGCAAUUGAAUGCUGCAU-UGAGCGUAUGUAUAUUUAUAUGCAUACCGACAU
...(((..((((((....).......(((((.....(((((((((...((((......)))).)))))))))......)))))...-)))))(((((((((....))))))))))))... ( -40.60)
>consensus
UAAUCGUUGCUCAGGCGACAUGUUUACGGCGGUGCGUGCAGUUGGCUUGAUGCAUGUUUAUUUCCAGCUGCAAUUGAAUGCUGCAU_UGAGCGUAUGUAUAUUUAUAUGUAUACCGACAU
.....(((((((((....).........(((((.(((((((((((...((((......)))).)))))))))..))...)))))...)))))(((((((((....))))))))).))).. (-36.42 = -35.10 +  -1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:44 2006