| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,735,087 – 6,735,207 |
| Length | 120 |
| Max. P | 0.541188 |
| Location | 6,735,087 – 6,735,207 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.67 |
| Mean single sequence MFE | -29.40 |
| Consensus MFE | -25.07 |
| Energy contribution | -26.30 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.541188 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6735087 120 - 27905053 AAAGCCCGCUCAAUCAUUCACCUAUGGAGUAUUGGAUUUCCACCGUCUGAAUGCAUUUGACUCUACAAACGGAUUCAACCGAACUCGACCAUAAAGCCAAAGCAUUGGUUGACCUUUAGC .......(.(((((((......(((((.....(((....))).((..(((((.(.((((......)))).).)))))..)).......)))))..((....))..))))))).)...... ( -23.60) >DroSec_CAF1 41 100 - 1 --------------------CCUAUGGAGAAGUGGAUUUCCACCGUCUGAGUGCAUUUGGCUCCACAAACGGAUUUAGCCGAAGUCGACCAUAAAGCCCCAGCUUUGGUUGACCUUUAGC --------------------....(((((..((((....))))((.((((((.(.((((......)))).).)))))).))..((((((((..((((....))))))))))))))))).. ( -31.50) >DroSim_CAF1 4356 119 - 1 AAAGCCAGCUUAAUCAUUCACCUAUGGAGUAGUGGAUUUCCACCGUCUGAGUGCAUUUGGCUCCA-AAACGGAUUCAGCCGAAGUCGACCAUAAAGCCACAGCUUUGGUUGACCUUUAGC ...((..(((((..(((((.......)))).((((....)))).)..))))))).(((((((((.-....)))....))))))((((((((..((((....))))))))))))....... ( -33.10) >consensus AAAGCC_GCU_AAUCAUUCACCUAUGGAGUAGUGGAUUUCCACCGUCUGAGUGCAUUUGGCUCCACAAACGGAUUCAGCCGAAGUCGACCAUAAAGCCACAGCUUUGGUUGACCUUUAGC ........................(((((..((((....))))((.((((((.(.((((......)))).).)))))).))..((((((((..((((....))))))))))))))))).. (-25.07 = -26.30 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:40 2006