Locus 2370

Sequence ID 3R_DroMel_CAF1
Location 6,730,016 – 6,730,108
Length 92
Max. P 0.512990
window3824

overview

Window 4

Location 6,730,016 – 6,730,108
Length 92
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 71.73
Mean single sequence MFE -21.62
Consensus MFE -14.50
Energy contribution -13.50
Covariance contribution -1.00
Combinations/Pair 1.39
Mean z-score -1.13
Structure conservation index 0.67
SVM decision value -0.04
SVM RNA-class probability 0.512990
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6730016 92 - 27905053
UGCCGCG----------------------------CCCCCUUCAACUCGGAUACGCCCGCCUAUAAGCCUACACGGCAAUGGAGUUGCAUAUGCAUUAUUGCCAACCCAGCGGCAUUUCA
((((((.----------------------------.......((((((((......))........(((.....)))....)))))).....(((....))).......))))))..... ( -26.90)
>DroSec_CAF1 13318 92 - 1
UGCCACG----------------------------CCCCCUUCCACUAGGAUACGCCCGCCUAUAAGCCUACACGGCAAUGGAGUUGCAUAUGCAUUAUUGCCAACCCAGCGGCAAUUCA
((((..(----------------------------(.....(((....)))...))..((......(((.....)))..(((.((((.....(((....))))))))))))))))..... ( -23.20)
>DroEre_CAF1 15972 90 - 1
GGCCACG----------------------------CCCCCUUCCACUCCGAUACGCCCGCCU--AAGCCUACACGGCAAUGGAGUUGCAUAUGCAUUAUUGCCAACCCAGCGGCAUUUCA
(((...)----------------------------))............((...(((.((..--..(((.....)))..(((.((((.....(((....)))))))))))))))...)). ( -21.40)
>DroYak_CAF1 14782 90 - 1
UGCCACG----------------------------CCCCUUUUCACUCGGAUACGCCCGCCU--AAGCCUACACGGCAAUGGAGUUCCAUAUGCAUUAUUGCCAACCCAGCGGCAAUUCA
((((...----------------------------............(((......)))...--..((......((((((((.((.......)).))))))))......))))))..... ( -20.00)
>DroAna_CAF1 14150 118 - 1
GAUCGUUCCCACCUUCUCCACCCCCAUUCCGCAAUCUCCUUACCUCACCGCCACUCCCACUU--CAGUCUAUUCAAUGAUGAAGCUGCAUAUGCAUUAUUAGCAGCCCGGAGGCAAUGUA
.................................................(((..(((...((--((.((........))))))(((((.((........)))))))..))))))...... ( -16.60)
>consensus
UGCCACG____________________________CCCCCUUCCACUCGGAUACGCCCGCCU__AAGCCUACACGGCAAUGGAGUUGCAUAUGCAUUAUUGCCAACCCAGCGGCAAUUCA
.................................................((...((((((......))......((((((((.((.......)).))))))))......).)))...)). (-14.50 = -13.50 +  -1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:39 2006