Locus 237

Sequence ID 3R_DroMel_CAF1
Location 939,389 – 939,509
Length 120
Max. P 0.500000
window425

overview

Window 5

Location 939,389 – 939,509
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 83.95
Mean single sequence MFE -34.40
Consensus MFE -25.58
Energy contribution -24.37
Covariance contribution -1.21
Combinations/Pair 1.21
Mean z-score -1.63
Structure conservation index 0.74
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 939389 120 - 27905053
UCAGCAGUGCAGGGUAAUCGGAAAUCCCCUAGUGUGAGCGGUAUUCCCAAUGGAAAUAUUAGAAUGGCACUCUGGGGGCUCUUGAGCAUAUGGACAUGUGCUAUAUGCUAUAUGCUCUAU
.(((.(((((.(((...........)))(((((((...(.((.......)).)..)))))))....))))))))(((((.....(((((((((.(....))))))))))....))))).. ( -36.90)
>DroSec_CAF1 28460 109 - 1
UCAAUAGUACUGGGAAAUCGGAAAUCCCCUAGUGUGAGCGGUAUUCCCUAUGGCAAUAUCAGAAUGGCACUCUGGGGACUCUUGAGUGU-----------CCAUAUGCUAUAUCCUCUAU
...((((((...(((..(((..(.(((((.(((((.(..((((((((....)).))))))....).)))))..))))).)..)))...)-----------))...))))))......... ( -32.50)
>DroSim_CAF1 34416 109 - 1
UCAAUAGUACUGGGAAAUCGGAAGCCCCCCAGUGUGAGCGGUAUUCCCAAUGGCAAUAUCAGAAUGGCACUCUGGGGACUCUUGAGUGU-----------CCAUAUGCUAUAUGGUCUAU
(((((((((...(((..(((..((((((..(((((.(..((((((((....)).))))))....).)))))..)))).))..)))...)-----------))...)))))).)))..... ( -33.80)
>consensus
UCAAUAGUACUGGGAAAUCGGAAAUCCCCUAGUGUGAGCGGUAUUCCCAAUGGCAAUAUCAGAAUGGCACUCUGGGGACUCUUGAGUGU___________CCAUAUGCUAUAUGCUCUAU
...((((((...((............((((((.(((..(((((((((....)).)))))).).....))).))))))(((....))).............))...))))))......... (-25.58 = -24.37 +  -1.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:26 2006