Locus 2367

Sequence ID 3R_DroMel_CAF1
Location 6,727,756 – 6,727,869
Length 113
Max. P 0.699834
window3821

overview

Window 1

Location 6,727,756 – 6,727,869
Length 113
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 76.37
Mean single sequence MFE -22.03
Consensus MFE -18.64
Energy contribution -18.77
Covariance contribution 0.13
Combinations/Pair 1.13
Mean z-score -1.20
Structure conservation index 0.85
SVM decision value 0.35
SVM RNA-class probability 0.699834
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6727756 113 - 27905053
CUGGGGCGAUAACGACUGGCUUGUCACUCUCCACUGCAGA--GCUACCAAUCCCCCCCUUCCUUCAAUCGCUGUAGUCUACCCCCAUGGCAACCCAGAACCCCU---ACCCCCCUCC--C
..((((((....)).((((.((((((......(((((((.--............................))))))).........)))))).))))..)))).---..........--. ( -23.51)
>DroSec_CAF1 10976 114 - 1
CUGGGGCGAUAACGACUGGCUUGUCACUCUCCACUGCAGA--GCUCCCAACCCCCCCU----UUCAAUCGCUGUAGUCUACCCCCAUGGCAACCUAAAACCCCUCUGACUCCCCUCCCCC
..((((((....))...((.((((((......(((((((.--................----........))))))).........)))))))).....))))................. ( -18.57)
>DroEre_CAF1 13744 95 - 1
CUGGGGCGAUAACGACUGGCUUGUCACUCUCCGCUGCAGA--UCCACCAGCCCCCC------CACAACCACUGUAGUCUACCCCCAUGGCAACCCAGCCCCCU-----------------
..((((((....)).((((.((((((......(((((((.--..............------........))))))).........)))))).)))).)))).----------------- ( -22.96)
>DroYak_CAF1 12418 97 - 1
CUGGGGCGAUAACGACUGGCUUGUCACUCUCCGCUGCAGAGAACGCCCCUUCCCCC------UACAACCACCAUAGUCUACCCCCAUGGCAACCCAGCCCCCC-----------------
..((((((.....(((......))).((((.......))))..)))))).......------.........................(((......)))....----------------- ( -23.10)
>consensus
CUGGGGCGAUAACGACUGGCUUGUCACUCUCCACUGCAGA__GCUACCAACCCCCC______UACAACCACUGUAGUCUACCCCCAUGGCAACCCAGAACCCC_________________
..((((((....)).((((.((((((......(((((((...............................))))))).........)))))).))))..))))................. (-18.64 = -18.77 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:36 2006