Locus 2366

Sequence ID 3R_DroMel_CAF1
Location 6,726,886 – 6,726,993
Length 107
Max. P 0.668452
window3820

overview

Window 0

Location 6,726,886 – 6,726,993
Length 107
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.50
Mean single sequence MFE -28.16
Consensus MFE -22.66
Energy contribution -23.10
Covariance contribution 0.44
Combinations/Pair 1.05
Mean z-score -1.49
Structure conservation index 0.80
SVM decision value 0.29
SVM RNA-class probability 0.668452
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6726886 107 + 27905053
ACA-------------GUUAACCGACGGUAGCAGUUGAUUAGUCUGCCAUGACAAUGCCAAGGAUUUUUCACAUUCCAUGUGCAAAUUGAUUCAAUUAUUGGCAUUUAAUUAAAUGCAAA
...-------------....(((...))).(((.((((((((((......)))(((((((((((((((((((((...))))).)))..))))).....))))))))))))))).)))... ( -23.80)
>DroSec_CAF1 10106 120 + 1
ACAGUGCUGGGCGAAAGUUAACCGACGGUAGCAGUUGAUUAGUCUGCCAUGACAAUGCCAAGGAUUUUUCACAUUCCAUGUGCAAAUUGAUUCAAUUAUUGGCAUUUAAUUAAAUGCAAA
....((((((((....)))......)))))(((.((((((((((......)))(((((((((((((((((((((...))))).)))..))))).....))))))))))))))).)))... ( -28.70)
>DroEre_CAF1 12826 120 + 1
ACAGUGCCGGGCGAAAGUUAACCGACGGUAGCAGUUGAUUAGUCUGUCAUGACAAUGCCGAGGAUUUUUCACAUUCCAUGUGCAAAUUGAUUCAAUUAUUGGCAUUUAAUUAAAUGCAAA
....((((((((....)))......)))))(((.((((((((((......)))(((((((((((((((((((((...))))).)))..))))).....))))))))))))))).)))... ( -30.60)
>DroYak_CAF1 11511 120 + 1
ACAGUGCCCGGCGAAAGUUAACCGACGGUAGCAGUUGAUUAGUCUGCCAUGACAAUGCCGAGGAUUUUUCACAUUCCAUGUGCAAAUUGAUUCAAUUAUUGGCAUUUAAUUAAAUGCAAA
....((((((((....)....)))..))))(((.((((((((((......)))(((((((((((((((((((((...))))).)))..))))).....))))))))))))))).)))... ( -29.40)
>DroAna_CAF1 11192 120 + 1
ACAGUGCUGGACGUCAGUUAACCAACAGGAGAAGUUGAUUAGUCUACCAUGACAAUGCCAAGGAUUUUUCACAUUCCAUGUGCAAACUGAUUCAAUUAUUGGCAUUUAAUUAAAUGCAAA
.(((((...((.(((((((...((((.......))))....(((......)))..(((((.(((..........))).)).))))))))))))...)))))((((((....))))))... ( -28.30)
>consensus
ACAGUGCCGGGCGAAAGUUAACCGACGGUAGCAGUUGAUUAGUCUGCCAUGACAAUGCCAAGGAUUUUUCACAUUCCAUGUGCAAAUUGAUUCAAUUAUUGGCAUUUAAUUAAAUGCAAA
.........(((....)))...........(((.((((((((((......)))(((((((((((((((((((((...))))).)))..))))).....))))))))))))))).)))... (-22.66 = -23.10 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:35 2006