Locus 2361

Sequence ID 3R_DroMel_CAF1
Location 6,723,815 – 6,723,910
Length 95
Max. P 0.599168
window3807

overview

Window 7

Location 6,723,815 – 6,723,910
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 85.02
Mean single sequence MFE -22.15
Consensus MFE -16.69
Energy contribution -16.29
Covariance contribution -0.40
Combinations/Pair 1.25
Mean z-score -1.62
Structure conservation index 0.75
SVM decision value 0.13
SVM RNA-class probability 0.599168
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6723815 95 + 27905053
AUUUCUGGCUCUGGUCACAUGUGUGACUCUCCGUCCGACGUGGUCACAGUGGGUUCCUUUCUCCACUUUCCAACUCCAACUCGAAACCCACAUCC
.((((.((....((((((....))))))..))((..((..(((....((((((........))))))..)))..))..))..))))......... ( -20.30)
>DroSec_CAF1 8314 95 + 1
AUUUCUGGCUCUGGUCACAUGUGUGACUCUCCGCCCGACGUGGUCACAGUGGGUUCCUUUCUCCCCUUUCCACCUCCAACUCGAAACCCACAUCC
.((((.(((...((((((....))))))....))).((.((((....((.(((.........)))))..)))).))......))))......... ( -23.00)
>DroSim_CAF1 8228 95 + 1
AUUUCUGGCUCUGGUCACAUGUGUGACUCUCCGCCCGAGGUGGUCACAGUGGGUUCCCUUCUCCCCUUUCCAACUCCAACUCGAAACCCACAUCC
(((((.(((...((((((....))))))....))).))))).......(((((((.............................))))))).... ( -23.65)
>DroEre_CAF1 8550 88 + 1
AUUUCUGGCUUUGGUCACAUGUGUGGCUCUCCGUCCGUCGUGGUCACAGUGGGUUCCAUUUUCCC-CCUCCAAC-UC-----CAAGCCCACAUCC
......(((((((..((((((..(((....)))..))).)))..)).((.(((.........)))-.)).....-..-----.)))))....... ( -20.90)
>DroYak_CAF1 8594 90 + 1
AUUUCUGGCUUUGGUCACAUGUGUGGCUCUCCGUCCGUCGUGGUCACAGUGGGUUCCAUU---CC-AUUCCAAC-CCACAUCCUCAUCCUCGUCC
......(((..((..((((((..(((....)))..))).)))..))..(((((((.....---..-.....)))-))))............))). ( -22.90)
>consensus
AUUUCUGGCUCUGGUCACAUGUGUGACUCUCCGUCCGACGUGGUCACAGUGGGUUCCAUUCUCCCCUUUCCAACUCCAACUCGAAACCCACAUCC
......(((...((((((....))))))....))).............(((((((.............................))))))).... (-16.69 = -16.29 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:24 2006