| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,723,621 – 6,723,735 |
| Length | 114 |
| Max. P | 0.716642 |
| Location | 6,723,621 – 6,723,735 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 88.16 |
| Mean single sequence MFE | -33.61 |
| Consensus MFE | -26.33 |
| Energy contribution | -27.03 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.716642 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6723621 114 - 27905053 CACAGUCACAGAGAGAAGGUUGCUGCGAUAAAAAGCAAAGAAGC------AAAAGCGCCACAAGUGUGGGGCCAACUUGAAAGACAAUCAGGCAGCAAUUUAAAACCAUUUUCACUGUGG ......(((((.((((((((((((((........((......))------....((.((((....)))).))...................)))))).......))).))))).))))). ( -34.41) >DroSec_CAF1 8120 114 - 1 CACAGUCACAGAGAGAAGGUUGCUGCGAUAAAAAGCAAAGGAGC------CAAAGCGCCACAAGUGUGGGGCCAACUUGAAAGACAAUCAGGCAGCAAUUUAAAACCAUUUUCACUGUGG ......(((((.((((((((((((((........((......))------....((.((((....)))).))...................)))))).......))).))))).))))). ( -33.51) >DroSim_CAF1 8034 114 - 1 CACAGUCACAGAGAGAAGGUUGCUGCGAUAAAAAGCAAAGGAGC------CAAAGCGCCACAAGUGUGGGGCCAACUUGAAAGACAAUCAGGCAGCAAUUUAAAACCAUUUUCACUGUGG ......(((((.((((((((((((((........((......))------....((.((((....)))).))...................)))))).......))).))))).))))). ( -33.51) >DroEre_CAF1 8370 106 - 1 CACAGUC---GAGAGAAGGUUGCUGCGAUAAAA-----AGGAGC------AAAGGCGCCACAAGUGUGGGGCCAACUUGAAAGACAAUCAGGCAGCAAUUUAAAACCAUUUUCACUGUGG ((((((.---(((((..(((((((((.......-----......------...(((.((((....)))).)))...((((.......)))))))))).......))).))))))))))). ( -36.11) >DroYak_CAF1 8414 106 - 1 CACAGUC---GAGAGACGGUUGCUGCGACAAAA-----AGGAGC------AAAAGCGCCACAAGUGUGGGGCCAACUUGAAAGACAAUCAGGCAGCAAUUUAAAACCAUUUUCACUGUGG ((((((.---(((((..(((((((((.......-----.((.((------....)).)).(((((.((....)))))))............)))))).......))).))))))))))). ( -32.31) >DroAna_CAF1 7778 118 - 1 CACAGUCGUGGAGA-AAGGUGGUCGGCAGAGGGGAAGAGGGAGCCAUCGGAAAGGCGCCACAAGUGUGG-GCCAACUUGAAAGACAAUCAGGCAGCAAUUUAAAACCAUUUUCACUGUGG ((((((....((((-(.(((((((.(((...(.......((.(((........))).)).)...))).)-)))..(((((.......)))))............))).))))))))))). ( -31.80) >consensus CACAGUCACAGAGAGAAGGUUGCUGCGAUAAAAAGCAAAGGAGC______AAAAGCGCCACAAGUGUGGGGCCAACUUGAAAGACAAUCAGGCAGCAAUUUAAAACCAUUUUCACUGUGG ((((((......((((((((((((((............................((.((((....)))).))....((((.......)))))))))).......))).))))))))))). (-26.33 = -27.03 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:23 2006