| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,723,444 – 6,723,562 |
| Length | 118 |
| Max. P | 0.985290 |
| Location | 6,723,444 – 6,723,562 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.79 |
| Mean single sequence MFE | -28.87 |
| Consensus MFE | -27.49 |
| Energy contribution | -27.13 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.95 |
| SVM decision value | 2.00 |
| SVM RNA-class probability | 0.985290 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6723444 118 + 27905053 AAAAGAGCAUGUUAAAGAAGGCCGGGCACAUGGCCUAAUGCCAAAUAACCAAAUCAAAACUAAUCAAGCAGAAGUUACUGCAACUGCCGCACAGCAGGUGGCAUCCGAUUUUCCAGGG-- ....(.((((........((((((......)))))).)))))......(((((((............((((......))))...((((((.......))))))...)))))....)).-- ( -28.60) >DroSec_CAF1 7947 118 + 1 AAAAGAGCAUGUUAAAGAAGGCCGGGCACAUGGCCUAAUGCCAAAUAACCAAAUCAAAACUAAUCAAGCAGAAGUUGCUGCAACUGCCGCACAGCAGGUGGCAUCCGAUUUUCCAGGG-- ....(.((((........((((((......)))))).)))))......(((((((............((((......))))...((((((.......))))))...)))))....)).-- ( -28.80) >DroSim_CAF1 7862 118 + 1 AAAAGAGCAUGUUAAAGAAGGCCGGGCACAUGGCCUAAUGCCAAAUAACCAAAUCAAAACUAAUCAAGCAGAAGUUACUGCAACUGCCGCACAGCAGGUGGCAUCCGAUUUUCCAGGG-- ....(.((((........((((((......)))))).)))))......(((((((............((((......))))...((((((.......))))))...)))))....)).-- ( -28.60) >DroEre_CAF1 8191 118 + 1 AAAAGAGCAUGUUAAAGAAGGCCAAGCACAUGGCCUAAUGCCAAAUAACCAAAUCAAAACUAAUCAAGCAGAAGUUACUGCAACUGCCGCACAGCAGGUGGCAUCCGAUUUUGCAGGC-- ......(((.(((.....((((((......)))))).((((((........................((((......))))..((((......)))).))))))..)))..)))....-- ( -30.90) >DroYak_CAF1 8242 120 + 1 AAAAGAGCAUGUUAAAGAAGGCCGAGCACAUGGCCUAAUGCCAAAUAACCAAAUCAAAACUAAUCAAGCAGAAGUUACUGCAACUGCCGCACAGCAGGUGGCAUCCGAUUUUCCAAGGGA ....(.((((........((((((......)))))).)))))......(((((((............((((......))))...((((((.......))))))...))))).....)).. ( -27.10) >DroAna_CAF1 7642 118 + 1 CAAAGAGCAUGUUAAAAAAGGCUAGGCACAUGGCCUAAUGCCAAAUAACCAAAUCAAAACUAAUCAAGCAGAAGUUACUGCAACUGCCGCACAGCAGGUGGCAUCCGACUUGUCAGGG-- ....((.((.(((.....((((((......)))))).((((((........................((((......))))..((((......)))).))))))..))).))))....-- ( -29.20) >consensus AAAAGAGCAUGUUAAAGAAGGCCGGGCACAUGGCCUAAUGCCAAAUAACCAAAUCAAAACUAAUCAAGCAGAAGUUACUGCAACUGCCGCACAGCAGGUGGCAUCCGAUUUUCCAGGG__ ..................((((((......)))))).((((((........................((((......))))..((((......)))).))))))................ (-27.49 = -27.13 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:22 2006