| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,718,602 – 6,718,717 |
| Length | 115 |
| Max. P | 0.804201 |
| Location | 6,718,602 – 6,718,717 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.58 |
| Mean single sequence MFE | -31.63 |
| Consensus MFE | -21.54 |
| Energy contribution | -22.27 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.804201 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6718602 115 + 27905053 AUUGACCACU-C----AAACUCAUAGACCCUAAACCCACCUUGUGCCAGCAGGGAAUCCUCCAUAACAUUGGCCACCAGCGUGCGAUCAUACAAAUCGGUGGCCUUCCUGGCCAGAAACU .((((....)-)----))......................(((.(((((...(((....)))........(((((((.(....)(((.......))))))))))...))))))))..... ( -27.20) >DroSec_CAF1 2964 119 + 1 ACUGACUAUC-CAUAUAUAGUCAUAGGCCCUAAACUCACCUUGUGCCAGCAGGGAAUCCUCCAUGACAUUGGCCACCAGCGUGCGAUCAUACAAAUCGGUGGCCUUCCUAGCCAGAAACU ..(((((((.-.....)))))))..(((..........((((((....))))))................(((((((.(....)(((.......))))))))))......)))....... ( -33.10) >DroSim_CAF1 2969 119 + 1 ACUGACUAUC-CUUAUAUAGUCAUAGGCCCUAAACCCACCUUGUGCCAGCAGGGAAUCCUCCAUGACAUUGGCCACCAGCGUGCGAUCAUACAAAUCGGUGGCCUUCCUGGCCAGAAACU ..(((((((.-.....)))))))..((((.........((((((....))))))................(((((((.(....)(((.......)))))))))).....))))....... ( -36.20) >DroEre_CAF1 3091 120 + 1 ACUCACUACAGCCACUACAGUUAACAGUCGUAAACCCACCUUGUGCCAGCACGGAGUCCUCCAUAACAUUGGCCACCAGGGUGCGAUCAUACAAAUCGGUGGCCUUCCUGGCUAGAAACU .........(((((.....((((...................(((....)))(((....))).))))...(((((((.(..((........))..).)))))))....)))))....... ( -30.30) >DroYak_CAF1 3113 111 + 1 ACC---------GACUACAGUUGACAGCCGUAAACCCACCUUGUGCCAGCACAGAGUCCUCCAUGACAUUGGCCACCAGGGUGCGAUCAUACAAAUCGGUGGCCUUCCUGGCCAGAAACU (((---------((.(((.((.....)).)))..(.(((((((((...((.(((.(((......))).))))))).))))))).)..........)))))((((.....))))....... ( -30.60) >DroAna_CAF1 2519 104 + 1 ---------------UGCGG-GAUGGUACUCGAACCUACCUUGGGCCAGAACUUUAUCCUCCAUGACAUUGGCCACCAGGCUGCGAUCAUAUAGGUCGGUCGCCUUUCUGGCCAGGAACU ---------------((.((-(((((...((...(((.....)))...))...))))))).)).....(((((((..((((..(((((.....)))))...))))...)))))))..... ( -32.40) >consensus ACUGACUA___C___UACAGUCAUAGGCCCUAAACCCACCUUGUGCCAGCACGGAAUCCUCCAUGACAUUGGCCACCAGCGUGCGAUCAUACAAAUCGGUGGCCUUCCUGGCCAGAAACU ........................................(((.(((((...(((....)))........(((((((.(....)(((.......))))))))))...))))))))..... (-21.54 = -22.27 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:18 2006