| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,717,604 – 6,717,714 |
| Length | 110 |
| Max. P | 0.887365 |
| Location | 6,717,604 – 6,717,714 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.82 |
| Mean single sequence MFE | -37.15 |
| Consensus MFE | -31.52 |
| Energy contribution | -31.55 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.887365 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6717604 110 - 27905053 GC---------CG-CUGAUCAGCUCCGUGGCUGAUGGCAUCGAACACUUUAAGAACGGCCAACAGGUCGAGGCCUUUCAGUGCCUGAACAAGGCCUUAAACAUUGAUCCGCGCAAUGUUG ((---------.(-(..(((((((....)))))))((.(((((............(((((....)))))(((((((((((...))))..)))))))......)))))))))))....... ( -37.40) >DroVir_CAF1 2245 119 - 1 GCAAAAUAUUUCU-AAAAUCAGCUCCGUAGCUGAUGGCAUUGAGCACUUUAAGAAUGGCCAACAAGUUGAGGCCUUUCAGUGCCUAAACAAGGCCCUAAACAUUGAUCCGCGCAAUGUCG .............-...(((((((....)))))))(((((((.((.......(((.((((..........)))).)))((.((((.....)))).))............)).))))))). ( -35.80) >DroGri_CAF1 2120 103 - 1 -----------------AACAGCUCCGUGGCUGACGGCAUUGAGCACUUUAAGAAUGGCCAACAAGUUGAGGCCUUUCAGUGCCUGAACAAGGCCUUAAACAUUGAUCCGCGCAAUGUCG -----------------..(((((....))))).((((((((.((.((........))....(((.((((((((((((((...))))..))))))))))...)))....)).)))))))) ( -36.00) >DroWil_CAF1 1310 107 - 1 ------------G-UGUAUCAGCUCCGUGGCUGAUGGCAUUGAGCACUUUAAGAAUGGCCAACAGGUCGAGGCCUUUCAGUGCCUAAAUAAGGCAUUGAACAUUGAUCCGCGCAAUGUUG ------------.-..((((((((....))))))))((((((.((...........((((..........)))).((((((((((.....)))))))))).........)).)))))).. ( -38.30) >DroMoj_CAF1 2153 115 - 1 GCACAAUA----U-AAUAUCAGCUCCGUGGCUGAUGGCAUUGAGCACUUUAAGAACGGCCAACAAGUCGAGGCCUUUCAGUGCCUCAACAAGGCCCUGAACAUUGAUCCGCGUAAUGUCG ........----.-...(((((((....)))))))(((((((.((...........((((..........)))).(((((.((((.....)))).))))).........)).))))))). ( -35.60) >DroAna_CAF1 1495 111 - 1 AC---------CGACUCAUCAGCUCCGUUGCUGAUGGCAUUGAGCACUUUAAGAACGGCCAGCAGGUCGAGGCCUUUCAGUGCCUGAACAAGGCCCUGAACAUUGAUCCGCGCAAUGUUG ..---------.....(((((((......)))))))((((((.((..........(((((....)))))......(((((.((((.....)))).))))).........)).)))))).. ( -39.80) >consensus GC__________G_AAUAUCAGCUCCGUGGCUGAUGGCAUUGAGCACUUUAAGAACGGCCAACAAGUCGAGGCCUUUCAGUGCCUGAACAAGGCCCUAAACAUUGAUCCGCGCAAUGUCG .................((((((......))))))(((((((.((.......(((.((((..........)))).)))((.((((.....)))).))............)).))))))). (-31.52 = -31.55 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:17 2006