Locus 2353

Sequence ID 3R_DroMel_CAF1
Location 6,716,621 – 6,716,731
Length 110
Max. P 0.610734
window3798

overview

Window 8

Location 6,716,621 – 6,716,731
Length 110
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 82.59
Mean single sequence MFE -28.80
Consensus MFE -13.96
Energy contribution -16.40
Covariance contribution 2.44
Combinations/Pair 1.10
Mean z-score -2.35
Structure conservation index 0.48
SVM decision value 0.16
SVM RNA-class probability 0.610734
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6716621 110 - 27905053
AAGACAACAAGUAUGUACCAGGAAUUAUUUAGCUUGACUUCCGAAC------UGCAAUUGCAUCCUAAACGAUGUUCCUUCAAAUCUGGGAUGAACAAUGCGGUUUUGUUGUCAAU
..(((((((...........(((((((.......))).))))((((------((((.((((((((((...(((..........))))))))))..))))))))))))))))))... ( -30.50)
>DroSec_CAF1 986 110 - 1
AAGACAACAAGUAUGUACCAGGAAUUAUUUAGCUUGACAUCCGAAC------UGCAAUUGCAUCCUAAACGAUGUUCCUUACAAUCUGGGGUGCACAAUGCGGUUUUGGUGUCAAU
.................................((((((((.((((------((((..(((((((((...(((((.....)).))))))))))))...)))))))).)))))))). ( -33.80)
>DroSim_CAF1 986 110 - 1
AAGACAACAAGUAUGUACCAGGAAUUAUUUAGCUUGACAUCCGAAC------UGCAAUUGCAACCUAAACGAUGUUCAUUACAAUCUGGGGUGCACAAUGCGGUUUUGGUGUCAAU
.................................((((((((.((((------((((..((((.((((...(((((.....)).))))))).))))...)))))))).)))))))). ( -29.80)
>DroEre_CAF1 1130 100 - 1
AAGAC---AAGUAUGUACCAGGAAU---UCAGCUUGAAUUCUGAAC------UGCAUUUGCAACUUAAUCGAUGCUC----UAAUAUGGAAUGCAUAAUUCGGUUUUGUUGUCAAU
.....---....(((((...(((((---((.....)))))))....------)))))(((((((..(((((((((((----(.....)))..)))....))))))..)))).))). ( -22.90)
>DroYak_CAF1 1145 106 - 1
AAGAC---AAGUAUGUACCAGGAAU---UCGGCUAGACUUCCGAACUUAAUUUGCAUUUGCAUCUUAGUCGAUGUUC----UAAUCUGCGAUGCACAAUUCGGUUUUGUUGUCAAU
..(((---((..........((((.---((.....)).))))(((((.((((((((((.(((..((((........)----)))..))))))))).)))).)))))..)))))... ( -27.00)
>consensus
AAGACAACAAGUAUGUACCAGGAAUUAUUUAGCUUGACUUCCGAAC______UGCAAUUGCAUCCUAAACGAUGUUC_UU_CAAUCUGGGAUGCACAAUGCGGUUUUGUUGUCAAU
..((((.((((.....(((.((((..............))))...........(((..(((((((((...(((..........))))))))))))...)))))))))).))))... (-13.96 = -16.40 +   2.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:15 2006