Locus 2351

Sequence ID 3R_DroMel_CAF1
Location 6,712,307 – 6,712,410
Length 103
Max. P 0.995741
window3795

overview

Window 5

Location 6,712,307 – 6,712,410
Length 103
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 90.96
Mean single sequence MFE -34.14
Consensus MFE -27.70
Energy contribution -29.30
Covariance contribution 1.60
Combinations/Pair 1.00
Mean z-score -2.74
Structure conservation index 0.81
SVM decision value 2.61
SVM RNA-class probability 0.995741
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6712307 103 - 27905053
UC------GCGCGAUGCGUUUGGGUUGGCAUUUCCUGAAACAAAUGCCAGUACUCAAGAAUCGUGAAGAACGAAAAGAAAUUCAAUUGCAAUUGCAACGGGCGGCAAUU
((------((.((.(((((((((((((((((((........))))))))..)))))))..((((.....))))...................)))).)).))))..... ( -30.70)
>DroSec_CAF1 8168 109 - 1
UCGCACCCGCGCGAUGCGUUUGGCUUGGCAUUUCCUGAAACAAAUGCCAGUACUCAAGAAUCGUGAAGAACGAAAAGAAAUUCAAUUGCAAAUGCAACGGGCGGCAAUU
......((((.((.(((((((((((.(((((((........)))))))))).........((((.....))))...............)))))))).)).))))..... ( -35.00)
>DroSim_CAF1 8273 109 - 1
UCGCACCCGCGCGAUGCGUUUGGCUUGGCAUUUCCUGAAACAAAUGCCAGUACUCAAGAAUCGUGAAGAACGAAAAGAAAUUCAAUUGCAAAUGCAACGGGCGGCAAUU
......((((.((.(((((((((((.(((((((........)))))))))).........((((.....))))...............)))))))).)).))))..... ( -35.00)
>DroEre_CAF1 8231 99 - 1
UC----------GGUGCGUUUGGCUUGGCAUUUCCUGAAACAAAUGCCAGUACUGAAGACUCGUGAAGAACGAAACGAAAUUCAAUUGCAAAUGCAUCGGGUGGCAAUU
((----------(((((((((((((.(((((((........))))))))))..((((...((((..........))))..))))....))))))))))))......... ( -31.00)
>DroYak_CAF1 8462 109 - 1
UCGCACCCGCGCGGUGCGUUUGGUUUGGCAUUUCCUGAAACAAAUGCCAGCACUCAAGAGUCGUGAAGAACGAAAAGAAAUUCAAUUGCAAAUGCAUCGGGCGGCAAUU
......((((.((((((((((((((((((((((........))))))))).)).......((((.....))))...............))))))))))).))))..... ( -39.00)
>consensus
UCGCACCCGCGCGAUGCGUUUGGCUUGGCAUUUCCUGAAACAAAUGCCAGUACUCAAGAAUCGUGAAGAACGAAAAGAAAUUCAAUUGCAAAUGCAACGGGCGGCAAUU
......((((.((.((((((((..(((((((((........)))))))))..........((((.....))))...............)))))))).)).))))..... (-27.70 = -29.30 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:12 2006