Locus 2350

Sequence ID 3R_DroMel_CAF1
Location 6,710,163 – 6,710,260
Length 97
Max. P 0.981812
window3794

overview

Window 4

Location 6,710,163 – 6,710,260
Length 97
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 88.85
Mean single sequence MFE -21.63
Consensus MFE -19.80
Energy contribution -20.30
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -4.30
Structure conservation index 0.92
SVM decision value 1.90
SVM RNA-class probability 0.981812
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6710163 97 + 27905053
CAUGUGUGUUGUAUAUAAACUUUAUGUAUACAUACAUAUAUGUACAUUUGUAUAUACAAUACACAUCUUUCAAGCAUAUCUACCGGCAACAAUAACA
.((((((((((((((((......(((((((.((....)).)))))))...))))))))))))))))..................(....)....... ( -24.50)
>DroSec_CAF1 6038 93 + 1
CAUGUGUGUUGUAUAUAAACUUUAUGUAUAC----AUAUAUGUACAUUUGUAUAUACAAUAAACAUCUUUCAAGCAGAUCUACCGGCAACAUUAACA
.((((.(((((((((((......(((((((.----.....)))))))...))))))))))).))))..................(....)....... ( -18.90)
>DroSim_CAF1 6145 87 + 1
CAUGUGUGUUGUAUAUAAACUUUAUGUA----------UAUGUACAUUUGUAUAUACAAUACACAUCUUUUAAACAGAUCUACCGGUAACAUUAACA
.((((((((((((((((......(((((----------....)))))...))))))))))))))))............................... ( -21.50)
>consensus
CAUGUGUGUUGUAUAUAAACUUUAUGUAUAC____AUAUAUGUACAUUUGUAUAUACAAUACACAUCUUUCAAGCAGAUCUACCGGCAACAUUAACA
.((((((((((((((((.....((((((((......))))))))......))))))))))))))))..................(....)....... (-19.80 = -20.30 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:11 2006