| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,701,852 – 6,701,948 |
| Length | 96 |
| Max. P | 0.785495 |
| Location | 6,701,852 – 6,701,948 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 69.77 |
| Mean single sequence MFE | -24.62 |
| Consensus MFE | -7.87 |
| Energy contribution | -8.35 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.32 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.785495 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6701852 96 + 27905053 AUUU---AAACAGAAGGCAGAGAU----A---UAAGUACCGCUAUU-CCGGCAAAUAUCU----AAAGUGA-GAAAC------AAAGUUAGUUGAUAACUUUGCUUAACUUUUGCACU ....---.........(((.((((----(---(.....(((.....-.)))...))))))----(((((..-.((.(------(((((((.....)))))))).)).))))))))... ( -18.40) >DroSec_CAF1 18047 96 + 1 AUUU---AAGCAGAAGGCAGAGAU----A---UAAGUACCGCUACU-CCGGCAAAUAUCU----AAAGUGA-GAAAC------AAAGUUAGAUGAUAACAUUGUUUAACUUCUGCACU ....---..(((((((((..((((----(---(.....(((.....-.)))...))))))----...))..-.((((------((.((((.....)))).))))))..)))))))... ( -24.70) >DroSim_CAF1 18108 96 + 1 AUUU---AAGCAGAAGGCAGAGAU----A---UAAGUACCGCUAUU-CCGGCAAAUAUCU----AAAGUGA-GAAAC------AAAGUUAGAUGAUAGCAUUGUUUAACUUCUGCACU ....---..(((((((((..((((----(---(.....(((.....-.)))...))))))----...))..-.((((------((.((((.....)))).))))))..)))))))... ( -24.70) >DroEre_CAF1 18471 104 + 1 AUUU---AGGCAAAAGGCAGAGAUACAUA---UAAGUACCGCUAUU-CCGGAAAGUAUCUAUGUAAAUUGG-GCAAC------AAUGUUAGAUGAUAACAGUGCGUAGCUUCGGCACU ....---...(((...(((.((((((((.---...)).(((.....-.)))...)))))).)))...))).-(((..------..(((((.....))))).)))((.((....)))). ( -22.20) >DroYak_CAF1 18196 107 + 1 AUUU---GAGCGGAAGGCAGAGAU----A---UAAGUGCCGCUAUU-CCGGCGAGUAUCUAUGUAAAUUGGUGCCAUAAUGCUAAUGUUAGAUGAUAGCAGUGUUUGGCUUCUGCUCU ....---((((((((.(((.((((----(---(...(((((.....-.))))).)))))).)))........((((.((((((..((((....))))..)))))))))))))))))). ( -37.10) >DroAna_CAF1 20696 106 + 1 AUUUGCUAGGCCCAUGGCAGAGCUAAUCAUAGUAACUAGCAGGAGCACCCAAAAUAAUUUA--UUAACUGU-CCAAU-------AUGUUGGUUAGUAAGCAUAAAUAGCAUCAAUA-- .(((((((((((...)))...((((....))))..)))))))).............(((((--(..((((.-((((.-------...)))).))))....))))))..........-- ( -20.60) >consensus AUUU___AAGCAGAAGGCAGAGAU____A___UAAGUACCGCUAUU_CCGGCAAAUAUCU____AAAGUGA_GAAAC______AAAGUUAGAUGAUAACAUUGUUUAACUUCUGCACU .........(((((((........................(((......)))..................................((((.....)))).........)))))))... ( -7.87 = -8.35 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:10 2006