Locus 2347

Sequence ID 3R_DroMel_CAF1
Location 6,680,985 – 6,681,102
Length 117
Max. P 0.907839
window3790

overview

Window 0

Location 6,680,985 – 6,681,102
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.25
Mean single sequence MFE -34.28
Consensus MFE -30.38
Energy contribution -31.46
Covariance contribution 1.08
Combinations/Pair 1.08
Mean z-score -1.47
Structure conservation index 0.89
SVM decision value 1.06
SVM RNA-class probability 0.907839
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6680985 117 - 27905053
GUAAAAGUGGCAAACAAUGUUGGGCGACUUUUUCGACAUCUCGAAGAACUCUUUUUCGUCGGCCAGCUCGGUGUAGGUGCCAUGACCCUGGAAAAGAUUAGCAAUU---UUGGGGAUUAA
......((((((.(((..(((((.((((((((((((....)))))))).........)))).)))))....)))...))))))..(((..(((...........))---)..)))..... ( -37.60)
>DroSec_CAF1 65741 117 - 1
GUAAAAGUGGCAAACAAUGUUGGGCGACUUUUUCGACAUCUCGAAGAACUCUUUUUCGUCGGCCAGCUCGGUGUAGGUGCCAUGACCCUGGAAAAGAUUAACAAUUAGUUUG---AUUAA
......((((((.(((..(((((.((((((((((((....)))))))).........)))).)))))....)))...))))))............((((((........)))---))).. ( -30.70)
>DroSim_CAF1 66534 120 - 1
GUAAAAGUGGCAAACAAUGUUGGGCGACUUUUUCGACAUCUCGAAGAACUCUUUUUCGUCGGCCAGCUCGGUGUAGGUGCCAUGACCCUGGAAAAGAUUAACAAUUAGAUUGGGGAUUAA
......((((((.(((..(((((.((((((((((((....)))))))).........)))).)))))....)))...))))))..(((..(....(((.....)))...)..)))..... ( -34.70)
>DroEre_CAF1 66973 120 - 1
GUAAAAGUGGCAAACAAUGUUGGGCGACUUUUUCGACAUCUCGAAGAACUCUUUUUCGUCGGCCAGCUCGGUGUAGGUGCCAUGACCCUAAAAUAGAUUAACAAUUAGUGUGGGGAUUAU
......((((((.(((..(((((.((((((((((((....)))))))).........)))).)))))....)))...))))))..(((((...(((........)))...)))))..... ( -36.20)
>DroYak_CAF1 67583 120 - 1
GUAAAAGUGGCAAACAAUGUUGGGCGACUUUUUUGACAUCUCGAAGAACUCCUUUUCGUCGGCCAGCUCGGUGUAGGUGCCAUGACCCUAAAAUGGAUUUACAAUUAGUUUGACGAUUAU
(((((.((((((.(((..(((((.((((((((((((....)))))))).........)))).)))))....)))...))))))...((......)).))))).................. ( -32.20)
>consensus
GUAAAAGUGGCAAACAAUGUUGGGCGACUUUUUCGACAUCUCGAAGAACUCUUUUUCGUCGGCCAGCUCGGUGUAGGUGCCAUGACCCUGGAAAAGAUUAACAAUUAGUUUGGGGAUUAA
......((((((.(((..(((((.((((((((((((....)))))))).........)))).)))))....)))...))))))..(((((((...(((.....)))..)))))))..... (-30.38 = -31.46 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:07 2006