Locus 2346

Sequence ID 3R_DroMel_CAF1
Location 6,677,119 – 6,677,223
Length 104
Max. P 0.635984
window3789

overview

Window 9

Location 6,677,119 – 6,677,223
Length 104
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 79.02
Mean single sequence MFE -22.03
Consensus MFE -12.36
Energy contribution -14.25
Covariance contribution 1.89
Combinations/Pair 1.22
Mean z-score -1.81
Structure conservation index 0.56
SVM decision value 0.21
SVM RNA-class probability 0.635984
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6677119 104 - 27905053
GUUAUCUUUUUACCAUGCU-------------CAAUUUAAUUUGCUUAUGACAUCCUUAAUUUUGCCAUAUCCCGACUGUACACUUUCGGCUAAUUUAUUGGUGAACUUGGUAACCU
((((((..(((((((.((.-------------.((((.....(((....).)).....))))..))......((((..(....)..)))).........)))))))...)))))).. ( -18.00)
>DroSec_CAF1 61710 104 - 1
GUUAUCUUCUUACCAUAGU-------------AGAUUUUAUUUGCUUAGGGCAUCCUUUAUUUUGUCAUAUCCCGACUGGAUAUUUUCGGUUACUUUAUUGGUGAUCUUGGUAACAU
((((((...((((((.(((-------------((((...)))))))...((((..........)))).......(((((((....))))))).......))))))....)))))).. ( -21.90)
>DroSim_CAF1 62707 104 - 1
GUUAUCUUCUUACCAUAGU-------------CGAUUUUAUUUGCUUAGGGCAUCCUUUAUUUUGUCAUAUCCCGACUGGAUAUUUUCGGUUACUUUAUUGGUAAUCUUGGUAACAU
((((((...((((((((..-------------(((..............((((..........))))((((((.....))))))..)))..))......))))))....)))))).. ( -21.30)
>DroEre_CAF1 62900 104 - 1
GUUAUCUUCUUACCAUAGU-------------UGAUUUUAUUUGCUUAGGGCAUCUUUGAUUUUGUCAUAUCCCGACUGGAUAUUGUCAGUUACUUUGUUGGUGAGCCUGGUAACAU
((((((..(((((((.(((-------------((((..(((((.....(((.((...((((...)))).)))))....)))))..))))...)))....)))))))...)))))).. ( -25.60)
>DroYak_CAF1 63424 104 - 1
CUUAACUUCUUACCAUAGU-------------UGAAUUUAUUUGCUUAGGGCAUCCUUUAUUUUAUCAUAUCCCGACUGGAUAUUUUCGGUUACUUUGUUGGUCAGCUUGGUAACAU
.........((((((.(((-------------(((.......(((.....))).....................(((((((....)))))))..........))))))))))))... ( -20.40)
>DroAna_CAF1 68040 115 - 1
AUU--CAAUUUACCAAAAUAUUUCGUAGGUAAUGAGCUUAUCUGCUAAGGGCAUCUUUUAUUUUGUCAAAGCUUGACUGGACGCUAUCUGUGACUUUGUUGGUAAGUUUGGUGACUU
...--.((((((((((...(..(((((((((.((..((..((.(((...((((..........))))..)))..))..)).)).)))))))))..)..)))))))))).(....).. ( -25.00)
>consensus
GUUAUCUUCUUACCAUAGU_____________UGAUUUUAUUUGCUUAGGGCAUCCUUUAUUUUGUCAUAUCCCGACUGGAUAUUUUCGGUUACUUUAUUGGUGAGCUUGGUAACAU
((((((..(((((((...........................(((.....))).....................(((((((....))))))).......)))))))...)))))).. (-12.36 = -14.25 +   1.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:06 2006