| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,670,789 – 6,670,884 |
| Length | 95 |
| Max. P | 0.541116 |
| Location | 6,670,789 – 6,670,884 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.59 |
| Mean single sequence MFE | -16.05 |
| Consensus MFE | -11.66 |
| Energy contribution | -12.22 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.08 |
| Mean z-score | -0.87 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.541116 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6670789 95 - 27905053 -----AAU---UUACUA-CU-------------ACAAUU--GAA-UUCGAAAAAGUUCAAAAUCUACCUGAACAGAUUUUGUUUGUUUUCCAUUUGCCAUUUCCCUAUGCACUAGAUGCA -----...---......-..-------------......--...-...(((((....((((((((........))))))))....)))))((((((.(((......)))...)))))).. ( -12.10) >DroVir_CAF1 73357 99 - 1 UUUC-GAA---AUUCUAAGU-------------ACUGUG--UUA-UUUGAAAUCGAUCA-AAUCUACCUGAACAGAUUUUGUAUGUUUUCCAUUUGCCAUUUCUCUAUGCACUAGAUGUA ....-...---.........-------------.(((((--(..-...(((((....((-(((......(((((.........)))))...)))))..))))).....)))).))..... ( -10.20) >DroGri_CAF1 79435 102 - 1 AUGC-AUA---AUUCUAGGU-------------ACUGUGUAUUA-UUUGAAAUAGAUCAAAAUCUACCUGAACAGAUUUUGUUUGUUUUCCAUUUGCCAUUUCUCUAUGCACUAGAUGUA .(((-(((---......(((-------------(..(((.....-...((((((((.((((((((........)))))))))))))))).))).)))).......))))))......... ( -18.62) >DroWil_CAF1 57743 111 - 1 -----AAUGUUUUACUA-CUUUAUUUAGCAUAAUCAAUC--GAA-UUCGAAAAUGUUCAAAAUCUACCUGAACAGAUUUUGUAUGUUUUCCAUUUGCCAUUUCCCUAUGCACUAGAUGUA -----............-...(((((((((((......(--(((-(..((((((((.((((((((........)))))))).)))))))).))))).........)))))..)))))).. ( -18.66) >DroMoj_CAF1 60136 92 - 1 UUUC-GAA---AUGCUAAGA-----------------------A-UUUGAAAUCGGUCAAAAUCUACCUGAACAGAUUUUGUAUGGUUUCCAUUUGCCAUUUCUCUAUGCACUAGAUGUA ....-(((---(((....((-----------------------(-(..(((((((..((((((((........))))))))..))))))).))))..))))))((((.....)))).... ( -19.20) >DroAna_CAF1 61876 99 - 1 UUUACAAU---UUA--A-CU-------------ACAAAG--GAAGUUCGAAAAUGUUCAAAAUCUACCUGAACAGAUUUUGUAUGUUUUCCAUUUGCCAUUUCCCUAUGCACUAGAUGCA ........---...--.-..-------------.....(--(((((..((((((((.((((((((........)))))))).)))))))).)))).)).........((((.....)))) ( -17.50) >consensus UUUC_AAA___AUACUA_CU_____________ACAAUG__GAA_UUCGAAAAAGUUCAAAAUCUACCUGAACAGAUUUUGUAUGUUUUCCAUUUGCCAUUUCCCUAUGCACUAGAUGUA ................................................(((((((..((((((((........))))))))..)))))))((((((.(((......)))...)))))).. (-11.66 = -12.22 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:59 2006