Locus 2340

Sequence ID 3R_DroMel_CAF1
Location 6,663,851 – 6,663,971
Length 120
Max. P 0.871281
window3780

overview

Window 0

Location 6,663,851 – 6,663,971
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.36
Mean single sequence MFE -41.34
Consensus MFE -25.07
Energy contribution -26.18
Covariance contribution 1.11
Combinations/Pair 1.14
Mean z-score -2.10
Structure conservation index 0.61
SVM decision value 0.87
SVM RNA-class probability 0.871281
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6663851 120 - 27905053
ACAGAAUGCCAAUUAGGAGGCUGAUUGUCAGCAGUCGAUAGGCGGUCAUUGCGCCCAACCAGGGACCAAUUGGACCCAGUCGCGAUGGCCAGUGGUGCUGCAUCUGCUGGUUCUGAUGAU
.((((((..(((((((....))))))).((((((..(...(((((((((((((....((..(((.((....)).))).))))))))))))......))).)..))))))))))))..... ( -45.10)
>DroPse_CAF1 49987 109 - 1
ACAGAAUACCAAUUAGGAGGCUGAUUGUCAGCAAUCGAUAGGCGGUCAUUGCACUCAGCCAGGGCCCAAAAAAAGCCCAUAGAGAUUGCCAGCCUUGUUGAAUCUGUUG-----------
(((((....((((...(((((((((((....)))))....(((((((...((.....))..((((.........)))).....)))))))))))))))))..)))))..----------- ( -36.00)
>DroSim_CAF1 49090 120 - 1
ACAGAAUGCCAAUUAGGAGGCUGAUUGUCAGCAGUCGAUAGGCGGUCAUUGCGCCCAACCAGGGACCAAUUGGACCCACUCGCGAUGGCCAGUGGUGCUGCAUCUGCUGGUUCUGAUGAU
.((((((..(((((((....))))))).((((((..(...((((((((((((((((.....))).((....)).......))))))))))......))).)..))))))))))))..... ( -44.60)
>DroEre_CAF1 49675 120 - 1
ACAGAAUGCCAAUUAGGAGGCUGAUUGUCAGCAGUCGAUAGGCGGUCAUUGCGCCCAACCAGGGACCAAUUGGACCCAGUCGCGAUGGCCAGUGGUGCUGCAUCUGCUGGUUCUGGUGAU
.((((((..(((((((....))))))).((((((..(...(((((((((((((....((..(((.((....)).))).))))))))))))......))).)..))))))))))))..... ( -45.30)
>DroAna_CAF1 50520 103 - 1
ACAGAAUGCCAAUUAGGAGGCUGAUUGUCAGCAGCCGAUAGGCGGUCAUUGCGCCCAACCAUGGUCCGAUCGGACCCAUCCGCGAUGGCCAUCCAAGCUG---------GUU--------
.(((...(((.(((.((..((((.....))))..))))).)))((((((((((.........(((((....)))))....)))))))))).......)))---------...-------- ( -41.42)
>DroPer_CAF1 57330 109 - 1
ACAGAAUACCAAUUAGAAGGCUGAUUGUCAGCAAUCGAUAGGCGGUCAUUGCACUCAGCCAGGGCCCAAAAAAAGCCCAUAGAGAUUGCCAGCCUUGUUGAAUCUGUUG-----------
(((((....((((...(((((((((((....)))))....(((((((...((.....))..((((.........)))).....)))))))))))))))))..)))))..----------- ( -35.60)
>consensus
ACAGAAUGCCAAUUAGGAGGCUGAUUGUCAGCAGUCGAUAGGCGGUCAUUGCGCCCAACCAGGGACCAAUUGGACCCAAUCGCGAUGGCCAGCCGUGCUGCAUCUGCUGGUU________
.(((...(((.(((.((..((((.....))))..))))).)))(((((((((.(((.....))).((....))........))))))))).......))).................... (-25.07 = -26.18 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:57 2006