Locus 234

Sequence ID 3R_DroMel_CAF1
Location 927,786 – 927,879
Length 93
Max. P 0.749232
window420

overview

Window 0

Location 927,786 – 927,879
Length 93
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 75.68
Mean single sequence MFE -30.33
Consensus MFE -9.42
Energy contribution -9.73
Covariance contribution 0.31
Combinations/Pair 1.17
Mean z-score -2.51
Structure conservation index 0.31
SVM decision value 0.47
SVM RNA-class probability 0.749232
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 927786 93 - 27905053
UU--GGGAGCAACCCUUCGGCCGGC-----GGCGGAACUUCGGCCUCUGCCUGGCUGCCGGAAUUUCCGCCUCCAUUCUCCAUUCGAGUAAAUAAUUUCC
..--.((((.....(....)..((.-----(((((((.((((((..((....))..))))))..))))))).))...))))................... ( -30.50)
>DroPse_CAF1 100856 81 - 1
UUCGGGGAUCAACCCUUAGUCUCG------GGCGGAACUU------CUGCUUGGAUGGAGGAAUUUCCGCCUCCAU-------UCGAGUAAAUAAUUUUC
...((((.((..(((........)------))..)).)))------)((((((((((((((........)))))))-------))))))).......... ( -31.50)
>DroSim_CAF1 22725 93 - 1
UU--GGGAGCAACCCUUCGGCCGGC-----GGCGGAACUUCGGCCUGUGCCUGGCUGCCGGAAUUUCCGCCUCCAUUCUCCAUUCGAGUAAAUAAUUUCC
..--.((((.....(....)..((.-----(((((((.((((((..((.....)).))))))..))))))).))...))))................... ( -30.40)
>DroYak_CAF1 37496 93 - 1
UU--GCGAGCACCCCUUCGGACGGC-----GGUGGAACUCCGGCUUCUGCCUGACUGCCGGAAUAUCCGCCUCCAUUCUCCAUUUGAAUAAAUAAUUUCC
.(--(.(((.....(....)..((.-----((((((..((((((.((.....))..))))))...)))))).))...))))).................. ( -28.90)
>DroAna_CAF1 15205 85 - 1
UU--GGCAGCAACCCUUCGGACGGGCAACGGACGGAACUU------CUGCCAAGCUGGCGGAAUUUCCGCCUCCAC-------UGAAGUAAAUAAUUUUC
..--..........((((((...(....)((.(((((.((------(((((.....))))))).)))))))....)-------)))))............ ( -29.20)
>DroPer_CAF1 100878 81 - 1
UUCGGGGAUCAACCCUUAGUCUCG------GGCGGAACUU------CUGCUUGGAUGGAGGAAUUUCCGCCUCCAU-------UCGAGUAAAUAAUUUUC
...((((.((..(((........)------))..)).)))------)((((((((((((((........)))))))-------))))))).......... ( -31.50)
>consensus
UU__GGGAGCAACCCUUCGGCCGGC_____GGCGGAACUU______CUGCCUGGCUGCCGGAAUUUCCGCCUCCAU_______UCGAGUAAAUAAUUUCC
....(((.....)))...............(((((((............((........))...)))))))............................. ( -9.42 =  -9.73 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:22 2006