Locus 2339

Sequence ID 3R_DroMel_CAF1
Location 6,662,380 – 6,662,473
Length 93
Max. P 0.602008
window3779

overview

Window 9

Location 6,662,380 – 6,662,473
Length 93
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 89.37
Mean single sequence MFE -21.35
Consensus MFE -17.65
Energy contribution -17.90
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.47
Structure conservation index 0.83
SVM decision value 0.14
SVM RNA-class probability 0.602008
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6662380 93 - 27905053
AUACGU--GUUUGUUCAAAUGUGAGCAAGAGAAAUGAG-CAGUGAGCCGCAAA------CCUAAGAGCUGAAAGCGUUUUGGCAAUAUGUUGAAAUGGGCAU
...(((--.((((((((....))))))))....)))..-......(((((...------.......))......(((((..((.....))..)))))))).. ( -21.10)
>DroSec_CAF1 46981 91 - 1
AUACG----UUUGUUCAAAUGUGAGCAAGAGAAAUGAG-CAGUGAGCCGAAAA------GCUAAAUGCUGAAAGCGUUUUGGCAAUAUGUUGAAAUGGGCAU
.....----((((((((....)))))))).....(.((-((...(((......------)))...)))).)...(((((..((.....))..)))))..... ( -22.60)
>DroSim_CAF1 47612 91 - 1
AUACG----UUUGUUCAAAUGUGAGCAAGAGAAAUGAG-CAGUGAGCCGAAAA------GUUAAGAGCUGAAAGCGUUUUGGCAAUAUGUUGAAAUGGGCAU
.....----((((((((....)))))))).........-......(((....(------((.....))).....(((((..((.....))..)))))))).. ( -19.90)
>DroYak_CAF1 48514 102 - 1
AUAUGCACGUUUGUACAAAUGUGAGCAAGAGAAAUGAGCCAGUGAGCCGACAAACUCAAACUAAGAGCUGAAAGCGUUUUGGCAAUAUGUUGAAAUGGGCAU
.....(((((((....)))))))..............(((..((((........))))................(((((..((.....))..)))))))).. ( -21.80)
>consensus
AUACG____UUUGUUCAAAUGUGAGCAAGAGAAAUGAG_CAGUGAGCCGAAAA______GCUAAGAGCUGAAAGCGUUUUGGCAAUAUGUUGAAAUGGGCAU
.........((((((((....))))))))................(((..................((.....))((((..((.....))..)))).))).. (-17.65 = -17.90 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:56 2006