Locus 2338

Sequence ID 3R_DroMel_CAF1
Location 6,661,074 – 6,661,166
Length 92
Max. P 0.833780
window3778

overview

Window 8

Location 6,661,074 – 6,661,166
Length 92
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 87.20
Mean single sequence MFE -26.96
Consensus MFE -17.84
Energy contribution -19.04
Covariance contribution 1.20
Combinations/Pair 1.00
Mean z-score -2.73
Structure conservation index 0.66
SVM decision value 0.72
SVM RNA-class probability 0.833780
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6661074 92 - 27905053
UCCGACAUCCAGUGGCAAUCUCUGUACACAAAAGGAAAGAAGGUUGGAAAAA---AAACGACCGUUCUGGAU----GCUCGAUUACAGGAGAAUCGGAG
((((((((((((.(((....(((...(......)...))).(((((......---...))))))))))))))----)(((........)))..))))). ( -27.00)
>DroSec_CAF1 45669 95 - 1
UCCGACAUCCAGUGGCAAUGUCAGUACACAAAA-GAAAGAAGGUUGGAUAAA---AAACGACCGUUCUGGAUGGAAGCUCGAUUACAGGAGAAUCGGAG
((((((((((((.(((..(((......)))...-.......(((((......---...)))))))))))))))....(((........)))..))))). ( -27.00)
>DroSim_CAF1 46300 98 - 1
UCCGACAUCCAGUGGCAAUCUCUGUACACAAAA-GAAAGAAGGUUGGAUAAAAAAAAACGACCAUUCUGGAUGGAUGCUCGAUUACAGGAGAAUCGGAG
(((((((((((((((((.....))).)))....-...(((((((((............))))).))))...))))))(((........)))..))))). ( -27.70)
>DroEre_CAF1 46922 90 - 1
UCCGACAUCCAGUGGCAAUCUCUGGACACAAA--GCAAGAAGGUUGGAGAAA---AAACGACCGUUCUGGAU----GCUCGAUUACAGGAGCAUCGGAG
(((....(((((.(.....).)))))......--...(((((((((......---...))))).)))).(((----((((........)))))))))). ( -28.70)
>DroYak_CAF1 47204 81 - 1
UCCGACAUCCAGUGGCAAUCUCUGGACACAAA--GAACGA---------AAA---AAACGAUCGUUCUGGAU----GCUCGAUUACAGGAGAAUCGGAG
((((((((((.(((.((.....))..)))..(--((((((---------...---......)))))))))))----)(((........)))..))))). ( -24.40)
>consensus
UCCGACAUCCAGUGGCAAUCUCUGUACACAAAA_GAAAGAAGGUUGGAUAAA___AAACGACCGUUCUGGAU____GCUCGAUUACAGGAGAAUCGGAG
(((((.((((((((............))).........((((((((............))))).)))))))).....(((........)))..))))). (-17.84 = -19.04 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:55 2006