| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,659,550 – 6,659,662 |
| Length | 112 |
| Max. P | 0.661365 |
| Location | 6,659,550 – 6,659,662 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 86.96 |
| Mean single sequence MFE | -27.12 |
| Consensus MFE | -20.11 |
| Energy contribution | -20.55 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.661365 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6659550 112 - 27905053 CAUUAAUGCCAGAGUCACCGUAGCCUUGUUUUUCAAUUGAUGGCCUAAAUAGAGGCAUUGUUUAAAGAAAUAAACAGCUGCUUUAGCCAGCACUUAGCUAUUUAGUUAGGUA (((((((....(((.(......).)))........)))))))((((......))))..((((((......))))))(((((....).))))((((((((....)))))))). ( -24.50) >DroSec_CAF1 44174 112 - 1 CAUUAAUGCCACAGCCACCGUAGCCUUGUUUAUCAAUUGAUGGCCUAAAUAGAGGCAUUGUUUAAAGAAAUAAACAGCUGCUUUAGGUAGCACUUAGCUAUUUAGGUAGCUA ............(((.((((((((..(((((((...((((..((((......)))).....))))....))))))))))))..((((((((.....))))))))))).))). ( -30.90) >DroEre_CAF1 45337 107 - 1 CACUAAUGCCAGAGUCACUGUAGCCUUGUUUAUCCAUUGAUGGCCUAAAUCGGGGCAUUGCUUAAAGAAAUAAACAGCUGCUUUGGCUGGCACUUAGCUACCUAAAU----- ..(((((((((..((((..(((((..(((((((...((((((.(((.....))).)))).....))...))))))))))))..))))))))).))))..........----- ( -29.80) >DroYak_CAF1 45644 107 - 1 CAUUAAUGCCAGAGUCACUGUAGCCUUGUUUAUCAAUUGAUGGCCUAAAUAGGGGCAUUGCUUAAAGAAAUAAACAGCUGCUUUAGCUGCCACUUAGCUACCUCAAU----- ...........(((.....(((((..(((((((...((((((.(((.....))).)))).....))...))))))))))))..((((((.....)))))).)))...----- ( -23.30) >consensus CAUUAAUGCCAGAGUCACCGUAGCCUUGUUUAUCAAUUGAUGGCCUAAAUAGAGGCAUUGCUUAAAGAAAUAAACAGCUGCUUUAGCUAGCACUUAGCUACCUAAAU_____ ..((((((((((.......(((((..(((((((...((((..((((......)))).....))))....)))))))))))).....)))))).))))............... (-20.11 = -20.55 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:52 2006