Locus 2330

Sequence ID 3R_DroMel_CAF1
Location 6,648,015 – 6,648,111
Length 96
Max. P 0.551518
window3766

overview

Window 6

Location 6,648,015 – 6,648,111
Length 96
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 95.27
Mean single sequence MFE -26.38
Consensus MFE -24.56
Energy contribution -24.32
Covariance contribution -0.24
Combinations/Pair 1.12
Mean z-score -1.09
Structure conservation index 0.93
SVM decision value 0.04
SVM RNA-class probability 0.551518
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6648015 96 - 27905053
UCGAAAUAGUUUUCAUAAUAGAGGUGCCAAUGUCGCACGCCACAUAUUUCCCGGGCGUUAAUUUGAGUGCCACAUACGAUGGGGCAGAC---CCCACCU
..((((....))))........((..((((......(((((............)))))....))).)..))......(.(((((....)---)))).). ( -24.00)
>DroSec_CAF1 33184 96 - 1
UCGAAAUAGUUUUCAUAAUAGAGGUGCCAAUGUCGCACGCCACAUAUUUCCCGGGCGUUAAUUUGAGUGCCACAUACGAUGUGGCAGAC---CCCACCU
..((((....)))).......(((((.....(((..(((((............))))).........((((((((...)))))))))))---..))))) ( -26.00)
>DroSim_CAF1 33451 96 - 1
UCGAAAUAGUUUUCAUAAUAGAGGUGCCAAUGUCGCACGCCACAUAUUUCCCGGGCGUUAAUUUGAGUGCCACAUACGAUGUGGCAGAC---CCCACCU
..((((....)))).......(((((.....(((..(((((............))))).........((((((((...)))))))))))---..))))) ( -26.00)
>DroEre_CAF1 33714 99 - 1
UCGAAAUAGUUUUCAUAAUAGAGGUGCCAAUGUCGCACGCCACAUAUUUCCCGGGCGUUAAUUUGAGUGCCUCAUACGAUGGGGCAGACCACCUCACCU
..((((....))))......((((((.....(((..(((((............))))).........((((((((...))))))))))))))))).... ( -29.40)
>DroYak_CAF1 33588 95 - 1
UCGAAAUAGUUUUCAUA-UAGAGGCGCCAAUGUCGCACGCCACAUAUUUCCCGGGCGUUAAUUUGAGUGCCUCAUACGAUGGGGCAGGU---CUCACCU
..((((....))))...-..((((((((((......(((((............)))))....))).)))))))....(.(((((....)---)))).). ( -26.50)
>consensus
UCGAAAUAGUUUUCAUAAUAGAGGUGCCAAUGUCGCACGCCACAUAUUUCCCGGGCGUUAAUUUGAGUGCCACAUACGAUGGGGCAGAC___CCCACCU
..((((....)))).......(((((.....(((..(((((............))))).........((((((((...))))))))))).....))))) (-24.56 = -24.32 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:44 2006