Locus 2329

Sequence ID 3R_DroMel_CAF1
Location 6,647,215 – 6,647,308
Length 93
Max. P 0.600576
window3765

overview

Window 5

Location 6,647,215 – 6,647,308
Length 93
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 94.81
Mean single sequence MFE -25.73
Consensus MFE -22.12
Energy contribution -22.29
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.49
Structure conservation index 0.86
SVM decision value 0.14
SVM RNA-class probability 0.600576
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6647215 93 + 27905053
GAUUCAAUAAACAAACGGUAUUAUUAAAUAAUGCGCUCGUUUUGCAGCGUCGCAAGUU-UUGGCCGAGA---------AAUCGGUUCCGCUGCCCGAUUUGUC
..........((((((((((((((...))))))).........((((((.(....)..-..((((((..---------..)))))).)))))).)).))))). ( -26.40)
>DroSec_CAF1 32378 93 + 1
GAUUCAAUAAACAAACGGUAUUAUUAAAUAAUGCGCUCGUUUUGCAGCGUCGCAAGUU-UUGGCCGAGA---------AAUCGGUUCCGCUGCCCGAUUUGUC
..........((((((((((((((...))))))).........((((((.(....)..-..((((((..---------..)))))).)))))).)).))))). ( -26.40)
>DroSim_CAF1 32641 93 + 1
GAUUCAAUAAACAAACGGUAUUAUUAAAUAAUGCGCUCGUUUUGCAGCGUCGCAAGUU-UUGGCCGAGA---------AAUCGGUUCCGCUGCCCGAUUUGUC
..........((((((((((((((...))))))).........((((((.(....)..-..((((((..---------..)))))).)))))).)).))))). ( -26.40)
>DroEre_CAF1 32935 93 + 1
GAUUCAAUAAACAAACGGUAUUAUUAAAUAAUGCGCUCGUUUUGCAGCGUCGCAAGUU-UUGGCCGAGA---------AAUCGGUUUCGCUGCCCGAUUUGUC
..........((((((((((((((...))))))).........((((((.(....)..-..((((((..---------..)))))).)))))).)).))))). ( -26.20)
>DroYak_CAF1 32768 94 + 1
GAUUCAAUAAACAAACGGUAUUAUUAAAUAAUGCGCUCGUUUUGCAGCGUCGCAAGUUUUUGGCCGAGA---------AAUCCGUUCCGCUGCCCGAUUUGUC
..........((((((((((((((...))))))).........((((((..((..((((((.....)))---------)))..))..)))))).)).))))). ( -21.30)
>DroAna_CAF1 33334 100 + 1
GAUUCAAUAAACAAACGGUAUUAUUAAAUAAUGCGCUCGUUUCGCAGCGUCGCAAGU---UGGCCGAGAAAUUGGAGAAAUCGGUUCCGCUGCCCGAUUUGUC
..........((((((((((((((...))))))).........((((((..((..((---(..((((....))))...)))..))..)))))).)).))))). ( -27.70)
>consensus
GAUUCAAUAAACAAACGGUAUUAUUAAAUAAUGCGCUCGUUUUGCAGCGUCGCAAGUU_UUGGCCGAGA_________AAUCGGUUCCGCUGCCCGAUUUGUC
..........((((((((((((((...))))))).........((((((.(....).....((((((.............)))))).)))))).)).))))). (-22.12 = -22.29 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:43 2006