Locus 2328

Sequence ID 3R_DroMel_CAF1
Location 6,646,880 – 6,646,970
Length 90
Max. P 0.992933
window3764

overview

Window 4

Location 6,646,880 – 6,646,970
Length 90
Sequences 4
Columns 109
Reading direction forward
Mean pairwise identity 75.76
Mean single sequence MFE -24.52
Consensus MFE -14.23
Energy contribution -14.10
Covariance contribution -0.13
Combinations/Pair 1.13
Mean z-score -2.56
Structure conservation index 0.58
SVM decision value 2.36
SVM RNA-class probability 0.992933
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6646880 90 + 27905053
-------UGCCACUUGGCCCAUACUGUAGUCGUUGCCGUCGACGACUGCAACACCC-CCUCCAAGUGCACUGGAAGAAAUACUA-----------CAAAAAAUCUUCAU
-------(((.((((((.......(((((((((((....)))))))))))......-...)))))))))...(((((.......-----------.......))))).. ( -27.13)
>DroSim_CAF1 32295 102 + 1
-------UGCCACUUGGCCCAUACUGUAGUCGUUGCCGUCGACGACUGCAACACCCCCCUCCAAGUGCACUGGAAAAAAUGCUAUAAAAAUAUUGCAAAAAAUGUUCAU
-------(((.((((((.......(((((((((((....)))))))))))..........))))))))).((((.....(((.(((....))).))).......)))). ( -26.23)
>DroEre_CAF1 32576 91 + 1
-------UGCCACUUGGCCCAUACUUUGGCCGUUGCCGUCGACGACUGCAACACCC-CCUCCAACUGCACUGGGAAAAAUGUAUUCAAAAUA----------CAUGCAG
-------(((.....((((........))))(((((.(((...))).)))))...(-((............)))....((((((.....)))----------)))))). ( -23.50)
>DroYak_CAF1 32382 108 + 1
UGCCUUUUGCCACUUUGCCCAUACUUUGGCCGUUGCCGUCGACGACUGCAGCACCC-CCUCCAACUGCACUGGAAAAAAUCUACUCAGAAUAUUACACAUAAUAUUCAA
..((...(((......(((........))).(((((.(((...))).)))))....-.........)))..))..............((((((((....)))))))).. ( -21.20)
>consensus
_______UGCCACUUGGCCCAUACUGUAGCCGUUGCCGUCGACGACUGCAACACCC_CCUCCAACUGCACUGGAAAAAAUGCAAUCAAAAUA___CAAAAAAUAUUCAU
........(((....))).............(((((.(((...))).))))).......((((.......))))................................... (-14.23 = -14.10 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:42 2006