Locus 2327

Sequence ID 3R_DroMel_CAF1
Location 6,644,830 – 6,644,934
Length 104
Max. P 0.572118
window3763

overview

Window 3

Location 6,644,830 – 6,644,934
Length 104
Sequences 3
Columns 104
Reading direction forward
Mean pairwise identity 96.79
Mean single sequence MFE -20.70
Consensus MFE -17.95
Energy contribution -18.07
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -1.98
Structure conservation index 0.87
SVM decision value 0.08
SVM RNA-class probability 0.572118
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6644830 104 + 27905053
UUCUUUUUCUCUUUGGCUCAUUUUCAAGCAUAUACUUAACACCAAGCCGGCUUUAUAUCGCUUUUGGUUUGGUUUUAGUUUUGGCUUACGGUUUUGAUCAGUUC
............((((.(((...((((((....(((.((.(((((((((((........)))...)))))))).)))))....))))..))...)))))))... ( -21.50)
>DroSec_CAF1 30026 104 + 1
UUCUUUUACUCUUUGGCUCAUUUUCAAACUUAUACUUAACACCAAGCCGGCUUUAUAUCGCUUUUGGUUUGGUUUUAGUUUUGGCUUUCGGUUUGGAUCAGUUC
..............((((....((((((((....(..((((((((((((((........)))...))))))))....)))..)......))))))))..)))). ( -20.30)
>DroSim_CAF1 30278 104 + 1
UUCUUUUACUCUUUGGCUCAUUUUCAAACUUAUACUUAACACCAAGCCGGCUUUAUAUCGCUUUUGGUUUGGUUUUAGUUUUGGCUUUCGGUUUGGAUCAGUUC
..............((((....((((((((....(..((((((((((((((........)))...))))))))....)))..)......))))))))..)))). ( -20.30)
>consensus
UUCUUUUACUCUUUGGCUCAUUUUCAAACUUAUACUUAACACCAAGCCGGCUUUAUAUCGCUUUUGGUUUGGUUUUAGUUUUGGCUUUCGGUUUGGAUCAGUUC
..............((((....(((((((.......(((.(((((((((((........)))...)))))))).)))((....)).....)))))))..)))). (-17.95 = -18.07 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:41 2006