Locus 2326

Sequence ID 3R_DroMel_CAF1
Location 6,643,379 – 6,643,481
Length 102
Max. P 0.755155
window3762

overview

Window 2

Location 6,643,379 – 6,643,481
Length 102
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 89.62
Mean single sequence MFE -36.48
Consensus MFE -27.94
Energy contribution -29.14
Covariance contribution 1.20
Combinations/Pair 1.08
Mean z-score -1.78
Structure conservation index 0.77
SVM decision value 0.49
SVM RNA-class probability 0.755155
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6643379 102 + 27905053
UCCAUUUCAUCCGGGUCCAGAGGGCCCGAACCGAGCUGCAGUUGUCGCCAGCGUCCUCGACCAUGGGUACCUCUACCCAUACCAGCAGUAUCGACUGUGGCG
...........(((((((...)))))))......((..((((((..((..(((((...))).(((((((....)))))))....)).))..))))))..)). ( -39.20)
>DroSec_CAF1 28604 100 + 1
UCCAUUUCAUCCGGGUCCAGAGGGCCCGAACCGAGCUGCAGUUGUCGCCAACGUCCUCGACCAUGGGUACC--UACCCAUACCAGCAGUAUCGACUGUGGCG
...........(((((((...)))))))......((..((((((..((....(((...))).((((((...--.)))))).......))..))))))..)). ( -36.00)
>DroSim_CAF1 28856 100 + 1
UCCAUUUCAUCCGGGUCCAGAGGGCCCGAACCGAGCUGCAGUUGUCGCCAACGUCCUCGACCAUGGGUACC--UACCCAUACCAGCAGUAUCGACUGUGGCG
...........(((((((...)))))))......((..((((((..((....(((...))).((((((...--.)))))).......))..))))))..)). ( -36.00)
>DroEre_CAF1 29120 94 + 1
UCCAUUUCAUCCGGGUCCAGAGGGCC-GAAACGAGCUGUAGUUGUCGCCAGCGUCCUCGACCAUGG-------UACCCAUGCCACCAGUAUCUACUGUGGCG
............(((((((...((.(-((.....((((..(....)..))))....))).)).)))-------.))))..(((((.(((....)))))))). ( -32.30)
>DroYak_CAF1 28777 89 + 1
UCCAUUUCAUCCGGGUCCAGAGGGCC-G-----AGCUGUAGUUGUCGCCAGCGUCCUCGGCCAUGG-------AACCCAUGCCAGCAGUAUCCACUGUGGCG
............(((((((...((((-(-----((.....((((....))))...))))))).)))-------.))))..((((.((((....)))))))). ( -38.90)
>consensus
UCCAUUUCAUCCGGGUCCAGAGGGCCCGAACCGAGCUGCAGUUGUCGCCAGCGUCCUCGACCAUGGGUACC__UACCCAUACCAGCAGUAUCGACUGUGGCG
...........(((((((...)))))))......((..((((((..((....(((...))).((((((......)))))).......))..))))))..)). (-27.94 = -29.14 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:40 2006