Locus 2325

Sequence ID 3R_DroMel_CAF1
Location 6,628,857 – 6,628,950
Length 93
Max. P 0.871994
window3761

overview

Window 1

Location 6,628,857 – 6,628,950
Length 93
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 80.04
Mean single sequence MFE -22.40
Consensus MFE -15.22
Energy contribution -14.42
Covariance contribution -0.80
Combinations/Pair 1.40
Mean z-score -1.97
Structure conservation index 0.68
SVM decision value 0.87
SVM RNA-class probability 0.871994
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6628857 93 - 27905053
AUUCAACGGCAGGUGCGUCGCUAUUUGGCCAAAAAGCGAGUGGCAGAACUUAAAAAUUCACGUGACGCACAAAAAGCCGAUGCUAAACC------CAAA
......((((..(((((((((((((((.(......))))))))).(((........)))....))))))).....))))..........------.... ( -28.00)
>DroSec_CAF1 21408 93 - 1
AUUCAAAGGCAGGUGCGUCGCCAUUUGGCCCAGAAGCGAGUGGAAAAACUUAAAAAUUCACGUGACGCACAAAAAGCCGAUGUUAAACC------CAAA
.......(((..((((((((((....)))...(((..((((......)))).....)))....))))))).....)))...........------.... ( -24.60)
>DroSim_CAF1 21918 93 - 1
AUUCAAAGGCAGGUGCGUCGUCAUUUGGCCAAGAAGCGAGUGGAAAAACUUAAAAAUUCACAUGACGCACAAAAAUCCGAUGCUAAACC------CAAA
.......((((.(((((((((......((......))..(((((............))))))))))))))..........)))).....------.... ( -20.10)
>DroEre_CAF1 22171 99 - 1
AUUCAAAGGCAGGUGCGUCGCUAUUUGGCCACCAAGCGGGUGGAAAAACUUAAAAAUUCACGUGACGCACAAAAACACGAUGGUAAACCUAAGCAUAAA
........((..(((((((((..(((..(((((.....)))))..))).............)))))))))...........((....))...))..... ( -25.66)
>DroYak_CAF1 21721 93 - 1
AUUCAAAGGCAGGUGCGUCGCUAUUUGGCCACGAAGCGAGUGGAAAAACUUAAAAAUUCACGUGACGCACAAAAACCCGAUGAUAAGCC------CAAA
..(((..((...(((((((((..((((....))))....(((((............))))))))))))))......))..)))......------.... ( -23.40)
>DroPer_CAF1 32015 93 - 1
AUUCAAAGGCUAUUUCGCUGCUACUUGGCCAAAAAGAGAUUUGAAAAACGAAAGGAUUCAGAAAAGGAAAAACGACGUAAUGAUA--CC----CAUAGU
.(((...(((((.............))))).........((((((...(....)..))))))....)))................--..----...... ( -12.62)
>consensus
AUUCAAAGGCAGGUGCGUCGCUAUUUGGCCAAGAAGCGAGUGGAAAAACUUAAAAAUUCACGUGACGCACAAAAACCCGAUGAUAAACC______CAAA
............((((((((((....)))..........(((((............)))))..)))))))............................. (-15.22 = -14.42 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:39 2006