| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,628,682 – 6,628,783 |
| Length | 101 |
| Max. P | 0.561018 |
| Location | 6,628,682 – 6,628,783 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 74.46 |
| Mean single sequence MFE | -27.40 |
| Consensus MFE | -11.36 |
| Energy contribution | -12.62 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.561018 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6628682 101 - 27905053 AAAUCGAUUGAAACAUGGCCCAGUAUCCUUAGCAACAGCAGCCAUCAUAAUCCAAAGAGCCUACCGGCGAAUGGUGGCACGACAUAAGGCCAAAAGAACCA ...............(((((..((.((....((....)).((((((((..((....))(((....)))..))))))))..)).))..)))))......... ( -26.10) >DroPse_CAF1 25136 101 - 1 AAAUCGAUUUAAAAAUGGUUCUUUUGGCUUAGUGACAGCAGCCAUCAUUAUUCAACGAGCAUUUCGAAGGAUGGUUGAUGCGCGGAGGGUCAAGGGAAAUG ..................((((((((((((.(((.((.((((((((....(((............))).)))))))).)))))...))))))))))))... ( -29.20) >DroEre_CAF1 21996 101 - 1 AAAUCGAUUGAAGCACGGCCCAGUGUCCUUGGCAACAGCAGCCAUCAUAAUCCAAAGAGCCUACCGGAGAAUGGUGACUCGGCAUAGGGCCAAGAGAACCA ................(((((.(((((..((((.......))))............(((..(((((.....))))).)))))))).))))).......... ( -30.00) >DroYak_CAF1 21546 101 - 1 AAAUCGAUUGCAGCACGGCCCAGUAUCCCUAGCAACAGCAGCCAUCAUAAUCCAAAGAGCCUUCCGCAGAAUGGUGGCACGUCAUAGGGCCAAGAGAACCA ................(((((..........((....)).((((((((..((....))((.....))...))))))))........))))).......... ( -25.50) >DroAna_CAF1 22881 101 - 1 AAAUCGAUUAAAAAACGAAAAAGUUUCCUUGGCAACAGCCGCCAUUAUAAUCCAGAGAGCCUUUCGCAGGAUGUUGGCCGUACAUAAGGCCAGAAGGAUAA ...(((.........))).......((((((((....))).........((((.((((...))))...)))).((((((........)))))))))))... ( -22.60) >DroPer_CAF1 31837 101 - 1 AAAUCGAUUGAAAAAUGGUUCUUUUGGCUUAGUGACAGCAGCCAUCAUUAUUCAAAGAGCAUUUCGAAGGAUGGUUGAUGCGCGGAGGGUCAAGGGAAAUG ....(.(((....))).)((((((((((((.(((.((.((((((((....((((((.....))).))).)))))))).)))))...))))))))))))... ( -31.00) >consensus AAAUCGAUUGAAAAACGGCCCAGUUUCCUUAGCAACAGCAGCCAUCAUAAUCCAAAGAGCCUUCCGAAGAAUGGUGGCUCGGCAUAGGGCCAAGAGAACCA ................(((((..........((....)).((((((((..(((............)))..))))))))........))))).......... (-11.36 = -12.62 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:38 2006